New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	557898 =	49 (0.970)	3 (0.060)	3/244	NT	6.4%	coding (28/534 nt)	rplF	50S ribosomal protein L6
	?	NC_002947	557943 =	41 (0.860)					coding (73/534 nt)	rplF	50S ribosomal protein L6

GCTTGCTGGTCACCATTGCGAGCGACGAAACGCAGCTCACCAGACTCTTCGGTAACTTCAACAGACGAGTGAACGTTCAGTTCGAGAGTACCTTTGGCACCCTTCACCGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGGCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/558052‑557898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcttTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGTCTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTGAC  >  NC_002947/557943‑558044                                                                                                                                                                                                                                                                   GCTTGCTGGTCACCATTGCGAGCGACGAAACGCAGCTCACCAGACTCTTCGGTAACTTCAACAGACGAGTGAACGTTCAGTTCGAGAGTACCTTTGGCACCCTTCACCGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGG                                                                                                              <  6:126033/149‑1     GCTGGTCACCATTGCGAGCGACGAAACGCAGCTCACCAGACTCTTCGGTAACTTCAACAGACGAGTGAACGTTCAGTTCGAGAGTACCTTTGGCACCCTTCACCGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGGCA                                                                                                            <  2:255939/147‑1      CTGGTCACCATTGCGAGCGACGAAACGCAGCTCACCAGACTCTTCGGTAACTTCAACAGACGAGTGAACGTTCAGTTCGAGAGTACCTTTGGCACCCTTCACCGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGGCAGCT                                                                                                         >  7:131638/1‑149                                                                                                            CGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGTCTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTC                    <  3:200900/132‑1                                                                                                            CGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGTCTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTC                    >  4:200900/1‑132                                                                                                             GAAAGCTGCTGACCGGCGAATTTCACTTCGACACCGGATGGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGTCTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTGAC  >  3:249420/1‑149                                                                                                                                                                                                                                                                   GCTTGCTGGTCACCATTGCGAGCGACGAAACGCAGCTCACCAGACTCTTCGGTAACTTCAACAGACGAGTGAACGTTCAGTTCGAGAGTACCTTTGGCACCCTTCACCGAAAGCTGCTGACCGGCGAATTTGACTTCGACACCGGATGGCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/558052‑557898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcttTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGTCTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTGAC  >  NC_002947/557943‑558044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.