New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	557898 =	49 (0.970)	3 (0.060)	3/244	NT	6.4%	coding (28/534 nt)	rplF	50S ribosomal protein L6
	?	NC_002947	557943 =	41 (0.860)					coding (73/534 nt)	rplF	50S ribosomal protein L6

TGGCGGTCTGGGCGTGTCTATCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTG  >  NC_002947/557753‑558042                                                                                                                                                  |                                                                                                                                                   tGGCGGGATGGGCGTGTCTATCGTCTCCACCAACAAATGTGTGATGACTGTTCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAATAACCCCGTTAAGc                                                                                                                                                 <  8:132601/149‑1 (MQ=255)         tGGGCGTGTCTATCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATcc                                                                                                                                         >  6:102384/1‑149 (MQ=255)         tGGGCGTGTCTATCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGATGCCAt                                                                                                                                           >  4:42295/1‑147 (MQ=255)           ggCGTGTCTATCGTCTCCACCAACAAATGTGTGATGACTGATCGCGCTGCGCGCGCTACCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATc                                                                                                                                          <  7:138026/146‑1 (MQ=255)           ggCGTGTCTATCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTACCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATc                                                                                                                                          >  8:138026/1‑146 (MQ=255)                    aTCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGTGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGt                                                                                                                              >  5:276248/1‑149 (MQ=255)                     tCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATc                                                                                                                                          >  6:326800/1‑136 (MQ=255)                     tCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATc                                                                                                                                          <  5:326800/136‑1 (MQ=255)                     tCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGt                                                                                                                              >  3:13233/1‑148 (MQ=255)                        tctcCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGTGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCaaa                                                                                                                          <  6:276248/149‑1 (MQ=255)                            caccaACAAAGGTGTGATGACTGATCGCGATGCGCGCGCTGCCGGTGTCGGCGGCTAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTAGCTAAGAACCACGTTAAGCTGCCATCCGGTGTCGAAGTCAAAttag                                                                                                                      >  6:106808/1‑147 (MQ=255)                             accaACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGc                                                                                                                     >  7:65262/1‑149 (MQ=255)                               caacaaAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCg                                                                                                                   >  5:306136/1‑149 (MQ=255)                                  caaAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGTCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTc                                                                                                                <  7:299402/149‑1 (MQ=255)                                      ggTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTcagca                                                                                                            <  3:204482/149‑1 (MQ=255)                                            gtcaccattgcgagcgacgaaacgcagctcaccagactcttcggtaacttcaacagacgagtgaacgttcagttcgagagtacctttggcacccttcaccgaAAGCTGCCATCCGGTGTCGAAGTGAAATTCGCCGGTCAGCAGCTTTc                                                                                                      >  3:249420‑M1/103‑149 (MQ=255)                                            atgaCTGATCGCACTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCttt                                                                                                       <  2:156962/148‑1 (MQ=255)                                             tgaCTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCg                                                                                                     >  4:67574/1‑149 (MQ=255)                                               aCTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCgg                                                                                                    <  3:250126/148‑1 (MQ=255)                                               aCTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCgg                                                                                                    <  5:102384/148‑1 (MQ=255)                                                   aTCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCGGGTCAGCAGCATTCGGtctac                                                                                               >  3:238985/1‑145 (MQ=255)                                                   aTCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGaa                                                                                                <  3:42295/148‑1 (MQ=255)                                                   aTCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGaa                                                                                                <  6:306136/148‑1 (MQ=255)                                                        gcTGCGCGCGCTGCCGGTGTCGGCTGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGTATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGc                                                                                          <  5:106808/149‑1 (MQ=255)                                                             gcgcgcTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCCTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAg                                                                                     >  7:120615/1‑149 (MQ=255)                                                              gaaacgcagctcaccagactcttcggtaacttcaacagacgagtgaacgttcagttcgagagtacctttggcacccttcaccgaAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCg                                                                                                     <  3:200900‑M1/48‑1 (MQ=255)                                                              gaaacgcagctcaccagactcttcggtaacttcaacagacgagtgaacgttcagttcgagagtacctttggcacccttcaccgaAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCg                                                                                                     >  4:200900‑M1/85‑132 (MQ=255)                                                                 gcTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTAc                                                                                 >  7:302115/1‑149 (MQ=255)                                                                     ccGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACtctc                                                                             <  4:13233/149‑1 (MQ=255)                                                                       ggTGTCGGCGGAGAACTTCTGTGAACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACGCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCg                                                                            >  8:131638/1‑148 (MQ=255)                                                                        gtgtCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGaa                                                                          <  5:59669/149‑1 (MQ=255)                                                                        gtgtCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGaa                                                                          >  6:59669/1‑149 (MQ=255)                                                                         tgtCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAAc                                                                         <  3:306408/149‑1 (MQ=255)                                                                                   gAAGTTCTGAGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGtt                                                                 >  4:13817/1‑147 (MQ=255)                                                                                   gAAGTTCTGAGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGtt                                                                 <  3:13817/147‑1 (MQ=255)                                                                                   aattttCTGTGCTCTGTGTTTTTATGTGGGATAGACATGTTTCGGGTGTCTATGATGCCCGTTAAGCTGCCATCCGGTGTGGAAGTCAATTTGGCCGGTCAGCTGCTTTCGGTGAAGGTTGGGAATGGTACTCTCGAACTGAACGttga                                                               <  4:238985/145‑3 (MQ=255)                                                                                         cTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGt                                                          <  8:65262/148‑1 (MQ=255)                                                                                                   tgtTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCAGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGt                                              >  8:46898/1‑148 (MQ=255)                                                                                                          aGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCg                                         >  5:276767/1‑146 (MQ=255)                                                                                                             ggggATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGACCTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGt                                   >  6:330807/1‑149 (MQ=255)                                                                                                                     aCATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGaa                                       >  7:240651/1‑137 (MQ=255)                                                                                                                     aCATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGaa                                       <  8:240651/137‑1 (MQ=255)                                                                                                                             cgcgTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGttt                   >  2:170457/1‑149 (MQ=255)                                                                                                                              gcgTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAAGGTTCACTCGT‑‑CTGTTGAAGTTACTGAAGAGTCTGGTGAGCTGCGTTtc                  <  7:46898/149‑1 (MQ=255)                                                                                                                                gTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCt                         <  7:66458/140‑1 (MQ=255)                                                                                                                                gTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCt                         >  8:66458/1‑140 (MQ=255)                                                                                                                                gTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTtcgt                <  1:170457/149‑1 (MQ=255)                                                                                                                                   gCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGtcgc             <  6:276767/149‑1 (MQ=255)                                                                                                                                     tAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCTGGGGTCGCTGTTGTAGTTTGAGAAGAGTGTGGTGAGCTGCGTTTAGtcgc             >  1:268827/1‑149 (MQ=255)                                                                                                                                      aaGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGtcgc             <  6:87153/146‑1 (MQ=255)                                                                                                                                      aaGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGtcgc             >  5:87153/1‑146 (MQ=255)                                                                                                                                           ccccGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATg     <  3:67574/149‑1 (MQ=255)                                                                                                                                            cccGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATgg    >  7:176879/1‑149 (MQ=255)                                                                                                                                             ccGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGt   >  2:179239/1‑149 (MQ=255)                                                                                                                                              cGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTg  <  8:176879/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   TGGCGGTCTGGGCGTGTCTATCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGACATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCGAACTGAACGTTCACTCGT‑‑CTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTG  >  NC_002947/557753‑558042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.