New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 693275	39 (0.770)	3 (0.060)	3/242	NT	7.5%	coding (767/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693320	37 (0.780)					coding (722/918 nt)	PP_0595	LysR family transcriptional regulator

GCATCAACGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/693121‑693275 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggcgtTTCTCATCCTTACCGGGCGCTATATCGGCTACCTGCCCGACCACTACGCCATGTT  <  NC_002947/693320‑693266                                                                                                                                                                                                                    GCATCAACGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACA                                                               >  1:297860/1‑149   ATCAACGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATG                                                             >  3:267285/1‑149    TCAACGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAATCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGG                                                            >  8:278777/1‑149                                         AACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTTTCTCATCCTTACCGGGCGCTATATCGGCTACCT                       >  1:222054/1‑149                                           CACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGG                                                            <  7:278527/110‑1                                           CACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGG                                                            >  8:278527/1‑110                                                             GCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTTTCTCATCCTTACCGGGCGCTATATCGGCTACCTGCCCGACCACTACGCCATGT   <  2:222054/149‑1                                                              CCTTTGCGGGTAATCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTTTCTCATCCTTACCGGGCGCTATATCGGCTACCTGCCCGACCACTACGCCATGTT  <  7:278777/149‑1                                                                                                                                                                                                                    GCATCAACGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/693121‑693275 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggcgtTTCTCATCCTTACCGGGCGCTATATCGGCTACCTGCCCGACCACTACGCCATGTT  <  NC_002947/693320‑693266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.