New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 693275	39 (0.770)	3 (0.060)	3/242	NT	7.5%	coding (767/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693320	37 (0.780)					coding (722/918 nt)	PP_0595	LysR family transcriptional regulator

TTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGTCGTCGGCGTAG  >  NC_002947/693184‑693466                                                                                                                                         |                                                                                                                                                   tttGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCt                                                                                                                                        >  7:302313/1‑149 (MQ=255)     cGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTcgcg                                                                                                                                    <  4:267285/149‑1 (MQ=255)        gTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGTTGAGAAACGCCATGCCCTCGCGGTc                                                                                                                                 <  3:1025/149‑1 (MQ=255)           aCCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAg                                                                                                                               <  1:164517/148‑1 (MQ=255)             ccAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAg                                                                                                                            <  8:92570/149‑1 (MQ=255)             ccAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGACTTGCTGCACACAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGAGGTCAGAAg                                                                                                                            >  2:45554/1‑149 (MQ=255)             ccAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGACATGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGAGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGTTCAGAAg                                                                                                                            >  1:228281/1‑149 (MQ=255)                    aggctcaggTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGc                                                                                                                     >  5:81600/1‑149 (MQ=255)                          aggTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGc                                                                                                                <  6:145366/148‑1 (MQ=255)                              cATAAAAACGCTCCTTGGGTTTTAGCGCACGCAAACGGGCTTGCTGCACCCAGAAGATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCtgt                                                                                                                  <  4:30091/142‑1 (MQ=255)                              cATAAAAACGATCCTTGGGTTTGAGCGCACGAAAACGGCCTTGCTGCACCAAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCtgtgagatcg                                                                                                           >  3:30091/1‑143 (MQ=255)                                         tCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTgg                                                                                                  >  4:252333/1‑147 (MQ=255)                                            ttGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTg                                                                                             >  5:228009/1‑149 (MQ=255)                                              gggTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTgc                                                                                            <  1:113917/148‑1 (MQ=255)                                                     aGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGAt                                                                                    <  3:252333/149‑1 (MQ=255)                                                               aaCGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTcggccgg                                                                           >  5:6256/1‑148 (MQ=255)                                                                           gcACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                                                                      >  3:98343/1‑125 (MQ=255)                                                                           gcACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                                                                      <  4:98343/125‑1 (MQ=255)                                                                               ccAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTggggg                                                          >  3:202060/1‑149 (MQ=255)                                                                                   aaCATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAacgccatgttctgggtgcagcaaggccgtttgcgtgcgctcaaacccaaggagcgtttttatgacctgagcctgagctggattacccgcaaagg                                                      <  7:278777‑M2/149‑95 (MQ=255)                                                                                    aCATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAacgccatgttctgggtgcagcaaggccgtttgcgtgcgctcaaacccaaggagcgtttttatgacctgagcctgagctgggttacccgcaaaggc                                                     <  2:222054‑M2/149‑96 (MQ=255)                                                                                     cttGGCGTTGTGGTCGGGCAGGTTGCCGATATAGGGCCCGGTAATGATGAGATACGCCATGCCCTCGCGGTCAGAAGGACTGTCTGTGAAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGTGGGTGATgg                                                    <  2:228281/147‑1 (MQ=255)                                                                                          cGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                                                                      <  2:103390/110‑1 (MQ=255)                                                                                          cGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGCCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                                                                      >  1:103390/1‑110 (MQ=255)                                                                                              gTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGc                                           >  4:191223/1‑149 (MQ=255)                                                                                               tGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCt                                          <  4:202060/149‑1 (MQ=255)                                                                                                 gTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGaa                                                                  <  1:133398/123‑1 (MQ=255)                                                                                                 gTCGGGCAGGTAGCCGATATAGCGCCAGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGaa                                                                  >  2:133398/1‑123 (MQ=255)                                                                                                  tCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGtt                                       <  8:302313/149‑1 (MQ=255)                                                                                                  tCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGtt                                       <  6:81600/149‑1 (MQ=255)                                                                                                     ggCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAg                                    <  3:191223/149‑1 (MQ=255)                                                                                                        aGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAacgccatgttctgggtgcagcaaggccgtttgcgtgcgctcaaacccaaggagcgtttttatgacctgagcctgagctgggttacccgcaaaggccggcgccccaacctggtgtt                                 >  1:222054‑M2/1‑34 (MQ=255)                                                                                                              ccGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCTGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCtcgtc                           <  1:45554/149‑1 (MQ=255)                                                                                                               cGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCtcgtcg                          >  8:107416/1‑149 (MQ=255)                                                                                                                     aGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATc                    >  7:4673/1‑149 (MQ=255)                                                                                                                        gcCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATctgc                 <  6:228009/149‑1 (MQ=255)                                                                                                                        gcCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATctgc                 >  2:235080/1‑149 (MQ=255)                                                                                                                         cccGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATctgct                <  6:6256/149‑1 (MQ=255)                                                                                                                                 ggATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGtcgtcg        <  7:107416/149‑1 (MQ=255)                                                                                                                                 ggATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGtcgtcg        >  7:35961/1‑149 (MQ=255)                                                                                                                                 ggATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGNCTATCTGCTGGtcgtcg        >  7:41002/1‑149 (MQ=255)                                                                                                                                     gagaANCGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGTCGTCGGCg     >  7:177561/1‑148 (MQ=255)                                                                                                                                       gaAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGa                                                       <  4:153532/96‑1 (MQ=255)                                                                                                                                       gaAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGTCGTCGGCg     >  6:119991/1‑146 (MQ=255)                                                                                                                                       gaAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGAGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGa                                                       >  3:153532/1‑96 (MQ=255)                                                                                                                                        aaaCGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGTCGTCGGCGTAg  >  1:323728/1‑148 (MQ=255)                                                                                                                                         |                                                                                                                                                   TTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGGCTTCCTGGCTGTTGAGGCGCTCGTCGTCTATCTGCTGGTCGTCGGCGTAG  >  NC_002947/693184‑693466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.