New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 693275	39 (0.770)	3 (0.060)	3/242	NT	7.5%	coding (767/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693320	37 (0.780)					coding (722/918 nt)	PP_0595	LysR family transcriptional regulator

CGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGG  >  NC_002947/693128‑693416                                                                                                                                                    |                                                                                                                                              cGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTa                                                                                                                                              <  7:107186/149‑1 (MQ=255)     tCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTg                                                                                                                                           <  1:1329/148‑1 (MQ=255)     tCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTg                                                                                                                                           <  6:249662/148‑1 (MQ=255)           ccAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGc                                                                                                                                    <  4:65689/149‑1 (MQ=255)             aGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAg                                                                                                                                  >  5:55294/1‑149 (MQ=255)                 tttCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGc                                                                                                                                    >  5:258589/1‑143 (MQ=255)                 tttCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGc                                                                                                                                    <  6:258589/143‑1 (MQ=255)                     gAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGc                                                                                                                             <  7:240756/146‑1 (MQ=255)                     gAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGc                                                                                                                             >  8:240756/1‑146 (MQ=255)                     gAGGAAGCTTTCCAACACCAGGGTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGt                                                                                                                                            <  8:121574/131‑1 (MQ=255)                           gCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAgc                                                                                                                    <  2:41379/149‑1 (MQ=255)                             tttCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAgcgc                                                                                                                  >  7:92570/1‑149 (MQ=255)                                  aaCACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTttctcatccttaccgggcgctatatcggctacct                                                                                                             >  1:222054‑M1/1‑115 (MQ=255)                                  aaCACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCgg                                                                                                              >  2:113917/1‑148 (MQ=255)                                    cacCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAg                                                                                                                                             <  2:113183/115‑1 (MQ=255)                                    cacCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAg                                                                                                                                             >  1:113183/1‑115 (MQ=255)                                       cAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGt                                                                                                                                >  7:299875/1‑125 (MQ=255)                                       cAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGt                                                                                                                                <  8:299875/125‑1 (MQ=255)                                       cAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGa                                                                                                        <  6:55294/149‑1 (MQ=255)                                        aGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGAt                                                                                                       <  2:297860/149‑1 (MQ=255)                                             ggggCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATga                                                                                                     <  2:42868/146‑1 (MQ=255)                                             ggggCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATga                                                                                                     >  1:42868/1‑146 (MQ=255)                                                      gCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTttctcatccttaccgggcgctatatcggctacctgcccgaccactacgccatgt                                                                                         <  2:222054‑M1/149‑55 (MQ=255)                                                       ccTTTGCGGGTAATCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTttctcatccttaccgggcgctatatcggctacctgcccgaccactacgccatgtt                                                                                        <  7:278777‑M1/149‑56 (MQ=255)                                                         tttGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCt                                                                                      >  7:302313/1‑149 (MQ=255)                                                             cGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTcgcg                                                                                  <  4:267285/149‑1 (MQ=255)                                                                gTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGTTGAGAAACGCCATGCCCTCGCGGTc                                                                               <  3:1025/149‑1 (MQ=255)                                                                   aCCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAg                                                                             <  1:164517/148‑1 (MQ=255)                                                                     ccAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAg                                                                          <  8:92570/149‑1 (MQ=255)                                                                     ccAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGACTTGCTGCACACAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGAGGTCAGAAg                                                                          >  2:45554/1‑149 (MQ=255)                                                                     ccAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGACATGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGAGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGTTCAGAAg                                                                          >  1:228281/1‑149 (MQ=255)                                                                           caggctcaggTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAg                                                                                                          >  1:144568/1‑111 (MQ=255)                                                                           caggctcaggTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAg                                                                                                          <  2:144568/111‑1 (MQ=255)                                                                            aggctcaggTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGc                                                                   >  5:81600/1‑149 (MQ=255)                                                                                  aggTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGc                                                              <  6:145366/148‑1 (MQ=255)                                                                                      cATAAAAACGCTCCTTGGGTTTTAGCGCACGCAAACGGGCTTGCTGCACCCAGAAGATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCtgt                                                                <  4:30091/142‑1 (MQ=255)                                                                                      cATAAAAACGATCCTTGGGTTTGAGCGCACGAAAACGGCCTTGCTGCACCAAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCtgtgagatcg                                                         >  3:30091/1‑143 (MQ=255)                                                                                                 tCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTgg                                                >  4:252333/1‑147 (MQ=255)                                                                                                    ttGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTg                                           >  5:228009/1‑149 (MQ=255)                                                                                                      gggTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTgc                                          <  1:113917/148‑1 (MQ=255)                                                                                                             aGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGAt                                  <  3:252333/149‑1 (MQ=255)                                                                                                                      aaaCGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAg                                                                                                          <  3:245079/68‑1 (MQ=255)                                                                                                                      aaaCGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAg                                                                                                          >  4:245079/1‑68 (MQ=255)                                                                                                                       aaCGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTcggccgg                         >  5:6256/1‑148 (MQ=255)                                                                                                                                   gcACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                    >  3:98343/1‑125 (MQ=255)                                                                                                                                   gcACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                    <  4:98343/125‑1 (MQ=255)                                                                                                                                       ccAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTggggg        >  3:202060/1‑149 (MQ=255)                                                                                                                                           aaCATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAacgccatgttctgggtgcagcaaggccgtttgcgtgcgctcaaacccaaggagcgtttttatgacctgagcctgagctggattacccgcaaagg    <  7:278777‑M2/149‑95 (MQ=255)                                                                                                                                            aCATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAacgccatgttctgggtgcagcaaggccgtttgcgtgcgctcaaacccaaggagcgtttttatgacctgagcctgagctgggttacccgcaaaggc   <  2:222054‑M2/149‑96 (MQ=255)                                                                                                                                             cttGGCGTTGTGGTCGGGCAGGTTGCCGATATAGGGCCCGGTAATGATGAGATACGCCATGCCCTCGCGGTCAGAAGGACTGTCTGTGAAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGTGGGTGATgg  <  2:228281/147‑1 (MQ=255)                                                                                                                                                  cGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                    <  2:103390/110‑1 (MQ=255)                                                                                                                                                  cGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGCCTGTGCAATTCAGCGCCTGGTAGTGCGCCTgg                                    >  1:103390/1‑110 (MQ=255)                                                                                                                                                    |                                                                                                                                              CGTGTCGCAGCCAGGCTTTCGAGGAAGCTTTCCAACACCAGGTTGGGGCGCCGGCCTTTGCGGGTAACCCAGCTCAGGCTCAGGTCATAAAAACGCTCCTTGGGTTTGAGCGCACGCAAACGGCCTTGCTGCACCCAGAACATGGCGTAGTGGTCGGGCAGGTAGCCGATATAGCGCCCGGTAAGGATGAGAAACGCCATGCCCTCGCGGTCAGAAGCACTGGCTGTGCAATTCAGCGCCTGGTAGTGCGCCTGGATGTCGGCCGGCAGGCGGAAGGTGGGGGTGATGG  >  NC_002947/693128‑693416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.