New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	884164 =	31 (0.620)	4 (0.080)	4/248	NT	11.1%	coding (75/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	884199 =	34 (0.700)					coding (110/2718 nt)	PP_0767	LuxR family transcriptional regulator

CAGTGCTCGGGCAGTGTTTCGCAAAACTCGATGGCCAGGGAGCTTTTGCCGAAACCCGCCGGGGCATTGACCAGCAGCAGCCGCCCGCCCAAACCGGCTTCCAGCCGCTGGCACAACCGCAGGCGCGGCACATGGCCGTCTGGCAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/884313‑884164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGCCAGCGG  >  NC_002947/884199‑884344                                                                                                                                                                                                                                                                                                          CAGTGCTCGGGCAGTGTTTCGCAAAACTCGATGGCCAGGGAGCTTTTGCCGAAACCCGCCGGGGCATTGACCAGCAGCAGCCGCCCGCCCAAACCGGCTTCCAGCCGCTGGCACAACCGCAGGCGCGGCACATGGCCGTCTGGCAGCGG                                                                                                                                                     >  6:101390/1‑149                              GATGGCCAGGGAGCTTTTGCCGAAACCCGCCGGGGCATTGACCAGCAGCAGCCGCCCGCCCAAACCGGCTTCCAGCCGCTGGCACAACCGCAGGCGCGGCACATGGCCGTCTGGCAG                                                                                                                                                        <  3:245457/117‑1                              GATGGCCAGGGAGCTTTTGCCGAAACCCGCCGGGGCATTGACCAGCAGCAGCCGCCCGCCCAAACCGGCTTCCAGCCGCTGGCACAACCGCAGGCGCGGCACATGGCCGTCTGGCAG                                                                                                                                                        >  4:245457/1‑117                                                                                                          CGCTGGCACAACCGCAGGCGCGGCACATGGCCGTCTGGCAGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTG                                            >  7:179832/1‑149                                                                                                                 ACAACCGCAGGCGCGGCACATGGCCGTCTGGCAGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTG                                                      <  3:19528/132‑1                                                                                                                 ACAACCGCAGGCGCGGCACATGGCCGTCTGGCAGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTG                                                      >  4:19528/1‑132                                                                                                                                        CCGTCTGGCAGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGC              <  8:179832/149‑1                                                                                                                                                     GTTGTGCCAGCGGCTGGAAGCCGGGTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGCCAGCGG  >  6:61756/1‑148                                                                                                                                                                                                                                                                                                          CAGTGCTCGGGCAGTGTTTCGCAAAACTCGATGGCCAGGGAGCTTTTGCCGAAACCCGCCGGGGCATTGACCAGCAGCAGCCGCCCGCCCAAACCGGCTTCCAGCCGCTGGCACAACCGCAGGCGCGGCACATGGCCGTCTGGCAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/884313‑884164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGCCAGCGG  >  NC_002947/884199‑884344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.