New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	884164 =	31 (0.620)	4 (0.080)	4/248	NT	11.1%	coding (75/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	884199 =	34 (0.700)					coding (110/2718 nt)	PP_0767	LuxR family transcriptional regulator

CGCCGTTGTCTTCCAACCAGAACGAGCCGGCCATGACAGATCTGTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGCCAGCGG  >  NC_002947/884058‑884344                                                                                                                                              |                                                                                                                                                  cgccgTTGTCTTCCAACCAGAACGAGCCGGCCATGACAGATCTGTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAg                                                                                                                                            >  5:158634/1‑149 (MQ=255)   cagtgtttcgcaaaactcgatggccagggagcttttgccgaaacccgccggggcattgaccagcagcagccgcccgcccaaaccggcttccagccgctggcacaACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCg                                                                                                                                          >  7:179832‑M1/105‑149 (MQ=255)    cgTTGTCTTCCAACCAGAACGAGCCGGCCATGACAGATCTGTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCgg                                                                                                                                         <  4:212917/149‑1 (MQ=255)     gTTGTCTTCCAACCAGAACGAGCCGGCCATGACAGATCTGTCCCGTAGCCTTGGATTCGCAAGTCAGGCCGTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTTCCAGCGGc                                                                                                                                        <  6:18736/149‑1 (MQ=255)             caaaactcgatggccagggagcttttgccgaaacccgccggggcattgaccagcagcagccgcccgcccaaaccggcttccagccgctggcacaACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTtgt                                                                                                                                                 >  4:19528‑M1/95‑132 (MQ=255)             caaaactcgatggccagggagcttttgccgaaacccgccggggcattgaccagcagcagccgcccgcccaaaccggcttccagccgctggcacaACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTtgt                                                                                                                                                 <  3:19528‑M1/38‑1 (MQ=255)                     aaCGAGCCGGCCATGACAGATCTGTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTggg                                                                                                                        >  4:274092/1‑149 (MQ=255)                               ccATGACAGATCTGTCCTGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGgctg                                                                                                              <  2:145009/149‑1 (MQ=255)                                            gTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGgctg                                                                                                              >  6:206122/1‑136 (MQ=255)                                            gTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGgctg                                                                                                              <  5:206122/136‑1 (MQ=255)                                             tCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGc                                                                                                >  7:286940/1‑149 (MQ=255)                                                     ccATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCGGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCcggcgg                                                                                        <  5:272294/149‑1 (MQ=255)                                                      cATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCggg                                                                                       >  5:101390/1‑149 (MQ=255)                                                          gATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTc                                                                                   <  7:216803/149‑1 (MQ=255)                                                             tCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGTTGCTGGTCAATGCCCCGGCGGGTTTCgg                                                                                 >  1:59746/1‑148 (MQ=255)                                                             tCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCgg                                                                                 >  4:87880/1‑148 (MQ=255)                                                               gCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGTTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCa                                                                               <  3:274092/148‑1 (MQ=255)                                                               gCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAAt                                                                                                  >  4:243285/1‑129 (MQ=255)                                                               gCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAAt                                                                                                  <  3:243285/129‑1 (MQ=255)                                                               gCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCa                                                                               >  2:111272/1‑148 (MQ=255)                                                                 aaGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCaaaa                                                                            <  6:158634/149‑1 (MQ=255)                                                                      aGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCAAGCGGCTGGAAGCCGGTTTGGGCGCGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGCCAAAAGCTcc                                                                       >  6:202141/1‑149 (MQ=255)                                                                         cccTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTg                                                                    <  8:286940/149‑1 (MQ=255)                                                                                            gCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGaaa                                                 >  3:204556/1‑149 (MQ=255)                                                                                                ttcttcCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACt                                             >  7:110984/1‑149 (MQ=255)                                                                                                 cgctggcacaaccgcaggcgcggcacatggccgtctggcagcggtTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTg                                            >  7:179832‑M2/46‑149 (MQ=255)                                                                                                   ttcCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGcc                                          >  7:240222/1‑149 (MQ=255)                                                                                                     ccGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGccc                                         <  4:204556/148‑1 (MQ=255)                                                                                                     ccGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGc                                           <  8:110984/146‑1 (MQ=255)                                                                                                      cGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGccc                                         >  4:20110/1‑147 (MQ=255)                                                                                                        acaaccgcaggcgcggcacatggccgtctggcagcggtTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTg                                                      >  4:19528‑M2/39‑132 (MQ=255)                                                                                                        acaaccgcaggcgcggcacatggccgtctggcagcggtTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTg                                                      <  3:19528‑M2/94‑1 (MQ=255)                                                                                                            CCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTg                                 >  6:101390‑M1/1‑149 (MQ=255)                                                                                                               CTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATc                                                              >  4:245457‑M1/1‑117 (MQ=255)                                                                                                               CTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATc                                                              <  3:245457‑M1/117‑1 (MQ=255)                                                                                                                          ccATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGa                                                   <  8:81922/117‑1 (MQ=255)                                                                                                                           cATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCg                                                    >  2:9689/1‑115 (MQ=255)                                                                                                                           cATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCg                                                    <  1:9689/115‑1 (MQ=255)                                                                                                                            aTGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGc                          >  6:12234/1‑140 (MQ=255)                                                                                                                            aTGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGc                          <  5:12234/140‑1 (MQ=255)                                                                                                                            aTGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCtt                 >  2:229697/1‑149 (MQ=255)                                                                                                                             tgtgCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTg                <  1:229697/149‑1 (MQ=255)                                                                                                                               ccgtctggcagcggtTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGc              <  8:179832‑M2/134‑1 (MQ=255)                                                                                                                                 ccGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCt            >  4:100564/1‑149 (MQ=255)                                                                                                                                     gcCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGc        >  2:14130/1‑149 (MQ=255)                                                                                                                                        tGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGc                          >  4:287971/1‑128 (MQ=255)                                                                                                                                        tGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGc                          <  3:287971/128‑1 (MQ=255)                                                                                                                                            gtTGTGCCAGCGGCTGGAAGCCGGGTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGCCAGCgg  >  6:61756‑M2/3‑148 (MQ=255)                                                                                                                                              |                                                                                                                                                  CGCCGTTGTCTTCCAACCAGAACGAGCCGGCCATGACAGATCTGTCCCGTACCCATGGATTCGCAAGTCAGGCCCTTGGCCTGCGGGACGGGCGTTTCTTCCGGCCACCGCTGCCAGACGGCCATGTGCCGCGCCTGCGGTTGTGCCAGCGGCTGGAAGCCGGTTTGGGCGGGCGGCTGCTGCTGGTCAATGCCCCGGCGGGTTTCGGCAAAAGCTCCCTGGCCATCGAGTTTTGCGAAACACTGCCCGAGCACTGGCGTAGCCTGTGGCTTGGCCTGAGCCAGCGG  >  NC_002947/884058‑884344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.