| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1136258 = | 66 (1.310) | 3 (0.060) | 3/244 | NT | 5.2% | coding (717/1509 nt) | PP_0997 | sigma‑54 dependent transcriptional regulator/sensory box protein |
| ? | NC_002947 | 1136328 = | 48 (1.010) | coding (647/1509 nt) | PP_0997 | sigma‑54 dependent transcriptional regulator/sensory box protein | |||||
AAGGCTTCGATGCCTTGCTGGGCGAGTCGCCGGCCATCCGCACCCTCAAGGCCCGCGCCTTACGCGTGGCTGCGCTCGATGCACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1136412‑1136258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGC > NC_002947/1136328‑1136471 AAGGCTTCGATGCCTTGCTGGGCGAGTCGCCGGCCATCCGCACCCTCAAGGCCCGCGCCTTACGCGTGGCTGCGCTCGATGCACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTC < 1:214091/149‑1 GGCTTCGATGCCTTGCTGGGCGAGTCGCCGGCCATCCGCACCCTCAAGGCCCGCGCCTTACGCGTGGCTGCGCTCGATGCACCGCTGCTGGTGCATGGCCAGACCGGCCCCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAG > 7:180504/1‑149 CATCCGCACCCTCAAGGCCCGCGCCTTACGCGTGGCTGCGCTCGATGCACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAG > 5:40794/1‑117 CATCCGCACCCTCAAGGCCCGCGCCTTACGCGTGGCTGCGCTCGATGCACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAG < 6:40794/117‑1 GATGCACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGC > 8:246705/1‑147 CACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCA < 7:246705/149‑1 ACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCAT > 3:159781/1‑149 CAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTA > 7:101137/1‑147 GCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGC < 2:164430/149‑1 GCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGT < 7:12870/140‑1 GCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGT > 8:12870/1‑140 AAGGCTTCGATGCCTTGCTGGGCGAGTCGCCGGCCATCCGCACCCTCAAGGCCCGCGCCTTACGCGTGGCTGCGCTCGATGCACCGCTGCTGGTGCATGGCGAGACCGGCACCGGTAAAGAACTGGTAGCCCGCGCCTGCCATGCCGTCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1136412‑1136258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGC > NC_002947/1136328‑1136471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |