New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1248689	42 (0.830)	4 (0.080)	3/246	NT	9.4%	coding (49/483 nt)	PP_1089	hypothetical protein
	?	NC_002947	= 1248709	37 (0.770)					coding (29/483 nt)	PP_1089	hypothetical protein

TATAGAACGACTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1248539‑1248689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccgcTGACGATCATTGCCATCTTCGCGGGGATCATCG  <  NC_002947/1248709‑1248677                                                                                                                                                                                          TATAGAACGACTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCC                                     >  2:56873/1‑149                                  GAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCTGACGATCATTGCCATCTTCGCGGGGATCAT    >  7:224230/1‑149                                   AAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCTGACGATCATTGCCATCTTCGCGGGGATCATC   <  3:105983/149‑1                                   AAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCTGACGATCATTGCCATCTTCGCGGGGATCATC   <  3:110545/149‑1                                    AAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCTGACGATCATTGCCATCTTCGCGGGGATCATCG  <  8:224230/149‑1                                                                                                                                                                                          TATAGAACGACTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGAAATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1248539‑1248689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccgcTGACGATCATTGCCATCTTCGCGGGGATCATCG  <  NC_002947/1248709‑1248677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.