New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1248689	42 (0.830)	4 (0.080)	3/246	NT	9.4%	coding (49/483 nt)	PP_1089	hypothetical protein
	?	NC_002947	= 1248709	37 (0.770)					coding (29/483 nt)	PP_1089	hypothetical protein

GACTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAAC  >  NC_002947/1248547‑1248834                                                                                                                                                 |                                                                                                                                                  gACTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAATCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGAt                                                                                                                                             <  7:157189/149‑1 (MQ=255)   cTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATgg                                                                                                                                           <  3:191921/149‑1 (MQ=255)    ttGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATgg                                                                                                                                           >  8:6184/1‑148 (MQ=255)            gAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGATCCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATc                                                                                                                                   <  8:147080/148‑1 (MQ=255)             aaGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGt                                                                                                                                 <  1:195201/149‑1 (MQ=255)              aGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTc                                                                                                                                <  5:119971/149‑1 (MQ=255)                      gtCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGc                                                                                                                        >  7:172490/1‑149 (MQ=255)                       tCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGc                                                                                                                        <  1:56873/148‑1 (MQ=255)                       tCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCg                                                                                                                       >  2:82845/1‑149 (MQ=255)                          gAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGTGCGTAGGCTTCGATGATCCCCGCGAAGATGGAAATGATCGTCAGCGGGGCGa                                                                                                                      >  7:207840/1‑147 (MQ=255)                          gAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCtgacgatcattgccatcttcgcggggatcat                                                                                                                    >  7:224230‑M1/1‑118 (MQ=255)                           aaaaaaCAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCtgacgatcattgccatcttcgcggggatcatc                                                                                                                   <  3:105983‑M1/149‑33 (MQ=255)                           aaaaaaCAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCtgacgatcattgccatcttcgcggggatcatc                                                                                                                   <  3:110545‑M1/149‑33 (MQ=255)                            aaaaaCAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCtgacgatcattgccatcttcgcggggatcatcg                                                                                                                  <  8:224230‑M1/149‑34 (MQ=255)                                    tGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCtt                                                                                                          <  5:131750/149‑1 (MQ=255)                                      ccGTCAGAAAGAATGGAAAGCCTACCAGGAACCATGTGTAGAGCCTTTTGCTTGACTCGCCGTGA‑‑AATGGCAGTGTGGCAAGTGCGGAGGCTTCGATGATCCCCGCGAAGATGGAAATGATCGTCAGCGTGGCGAGAGGTTGTGCTTgg                                                                                                        <  2:14511/149‑1 (MQ=255)                                       ggTCAGAAAGAATGGATAGCCTACCAGGACCCAGGTGTAGAGCCTTTGGCTGGACTCGGCGAGA‑‑AATGGCAGTGTGGCAAGGGGGGAGGCTTCGTTGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTTTGCTTgg                                                                                                        <  1:129117/147‑1 (MQ=255)                                        gTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGt                                                                                                      <  8:190111/149‑1 (MQ=255)                                        gTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGACATGGATGGCAGTGTGGCAAGAGCTGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTgg                                                                                                        >  1:257828/1‑149 (MQ=255)                                              aagaaTGGAAAGGCTACCATGAACCAGGGGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCACGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCAtata                                                                                                <  8:207840/149‑1 (MQ=255)                                                   tGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCg                                                                                           >  3:259876/1‑149 (MQ=255)                                                     gAAAGCCTACCAGGAACCAGGTGTAGATCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGt                                                                                          <  7:114060/148‑1 (MQ=255)                                                      taaGCCTACCTGGAACCAGGTGTAGTGCGTTTGGCTGGAGTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGtc                                                                                         <  4:259876/147‑1 (MQ=255)                                                          ccTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGtc                                                                                         <  2:2535/144‑1 (MQ=255)                                                          ccTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGtc                                                                                         >  1:2535/1‑144 (MQ=255)                                                             aCCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCgg                                                                                 >  7:125057/1‑149 (MQ=255)                                                              ccAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTgg                                                                                                        >  3:283854/1‑125 (MQ=255)                                                              ccAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTgg                                                                                                        <  4:283854/125‑1 (MQ=255)                                                               cAGGAACCAGGTGTAGAGCATTTTGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGtt                                                                               >  8:184504/1‑149 (MQ=255)                                                                    aCCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGAGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTc                                                                          <  2:257828/149‑1 (MQ=255)                                                                         gtgtAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGGAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCt                                                                     <  3:142050/149‑1 (MQ=255)                                                                                       gCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCata                                                                                                  <  6:269035/106‑1 (MQ=255)                                                                                       gCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCata                                                                                                  >  5:269035/1‑106 (MQ=255)                                                                                           gACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACt                                                   <  8:125057/149‑1 (MQ=255)                                                                                            aCTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTc                                                  <  7:6184/149‑1 (MQ=255)                                                                                                gCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCaa                                                <  8:172490/147‑1 (MQ=255)                                                                                                  cGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCt                                                               >  3:150455/1‑130 (MQ=255)                                                                                                  cGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCt                                                               <  4:150455/130‑1 (MQ=255)                                                                                                  cGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTa                                             >  2:123069/1‑148 (MQ=255)                                                                                                   gaga‑‑AATGGCAGTGTGGCAAGGGCGGAGGATTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTa                                             >  5:309684/1‑147 (MQ=255)                                                                                                                       aaGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgg                         >  5:279806/1‑149 (MQ=255)                                                                                                                       aaGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgg                         >  2:230887/1‑149 (MQ=255)                                                                                                                        agtgCGGATGCTTAGATGATCCCCGCGAAGATGGCAATGATTGTCATCGGGGGTTAATGTTGTGGTTGGGTTATATATGCCGTCTTCATGGGTTTTGTGCATCTTTACCTTACTGCTTTTCTCTACTAAAGGCTTGATTGTTTCCCggg                        <  6:309684/146‑1 (MQ=255)                                                                                                                         gggCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgggg                       <  7:184504/149‑1 (MQ=255)                                                                                                                         gggCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgggg                       <  6:279806/149‑1 (MQ=255)                                                                                                                                     cGATGATCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgttttt           <  8:224230‑M2/149‑117 (MQ=255)                                                                                                                                      gatgatCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgtttttt          <  3:110545‑M2/149‑118 (MQ=255)                                                                                                                                      gatgatCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgtttttt          <  3:105983‑M2/149‑118 (MQ=255)                                                                                                                                       atgatCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgttttttc         >  7:224230‑M2/1‑31 (MQ=255)                                                                                                                                          atCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCaga      <  1:82845/149‑1 (MQ=255)                                                                                                                                              ccGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAAc  >  2:198230/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GACTTGTAATTGAAGTTGAGTGTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAAC  >  NC_002947/1248547‑1248834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.