New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1248689	42 (0.830)	4 (0.080)	3/246	NT	9.4%	coding (49/483 nt)	PP_1089	hypothetical protein
	?	NC_002947	= 1248709	37 (0.770)					coding (29/483 nt)	PP_1089	hypothetical protein

GTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAACCTCGTTGTGTTGCTTTTTCGA  >  NC_002947/1248568‑1248855                                                                                                                                                |                                                                                                                                                   gtCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGc                                                                                                                                             >  7:172490/1‑149 (MQ=255)  tCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGc                                                                                                                                             <  1:56873/148‑1 (MQ=255)  tCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCg                                                                                                                                            >  2:82845/1‑149 (MQ=255)     gAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGTGCGTAGGCTTCGATGATCCCCGCGAAGATGGAAATGATCGTCAGCGGGGCGa                                                                                                                                           >  7:207840/1‑147 (MQ=255)               tGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCtt                                                                                                                               <  5:131750/149‑1 (MQ=255)                 ccGTCAGAAAGAATGGAAAGCCTACCAGGAACCATGTGTAGAGCCTTTTGCTTGACTCGCCGTGA‑‑AATGGCAGTGTGGCAAGTGCGGAGGCTTCGATGATCCCCGCGAAGATGGAAATGATCGTCAGCGTGGCGAGAGGTTGTGCTTgg                                                                                                                             <  2:14511/149‑1 (MQ=255)                  ggTCAGAAAGAATGGATAGCCTACCAGGACCCAGGTGTAGAGCCTTTGGCTGGACTCGGCGAGA‑‑AATGGCAGTGTGGCAAGGGGGGAGGCTTCGTTGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTTTGCTTgg                                                                                                                             <  1:129117/147‑1 (MQ=255)                   gTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGt                                                                                                                           <  8:190111/149‑1 (MQ=255)                   gTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGACATGGATGGCAGTGTGGCAAGAGCTGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTgg                                                                                                                             >  1:257828/1‑149 (MQ=255)                         aagaaTGGAAAGGCTACCATGAACCAGGGGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCACGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCAtata                                                                                                                     <  8:207840/149‑1 (MQ=255)                              tGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCg                                                                                                                >  3:259876/1‑149 (MQ=255)                                gAAAGCCTACCAGGAACCAGGTGTAGATCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGt                                                                                                               <  7:114060/148‑1 (MQ=255)                                 taaGCCTACCTGGAACCAGGTGTAGTGCGTTTGGCTGGAGTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGtc                                                                                                              <  4:259876/147‑1 (MQ=255)                                     ccTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGtc                                                                                                              <  2:2535/144‑1 (MQ=255)                                     ccTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGtc                                                                                                              >  1:2535/1‑144 (MQ=255)                                        aCCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCgg                                                                                                      >  7:125057/1‑149 (MQ=255)                                         ccAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTgg                                                                                                                             <  4:283854/125‑1 (MQ=255)                                         ccAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTgg                                                                                                                             >  3:283854/1‑125 (MQ=255)                                          cAGGAACCAGGTGTAGAGCATTTTGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGtt                                                                                                    >  8:184504/1‑149 (MQ=255)                                               aCCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGAGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTc                                                                                               <  2:257828/149‑1 (MQ=255)                                                    gtgtAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGGAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCt                                                                                          <  3:142050/149‑1 (MQ=255)                                                                  gCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCata                                                                                                                       >  5:269035/1‑106 (MQ=255)                                                                  gCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCata                                                                                                                       <  6:269035/106‑1 (MQ=255)                                                                      gACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACt                                                                        <  8:125057/149‑1 (MQ=255)                                                                       aCTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTc                                                                       <  7:6184/149‑1 (MQ=255)                                                                           gCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCaa                                                                     <  8:172490/147‑1 (MQ=255)                                                                             cGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCt                                                                                    <  4:150455/130‑1 (MQ=255)                                                                             cGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCt                                                                                    >  3:150455/1‑130 (MQ=255)                                                                             cGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTa                                                                  >  2:123069/1‑148 (MQ=255)                                                                              gaga‑‑AATGGCAGTGTGGCAAGGGCGGAGGATTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTa                                                                  >  5:309684/1‑147 (MQ=255)                                                                                                  aaGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgg                                              >  5:279806/1‑149 (MQ=255)                                                                                                  aaGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgg                                              >  2:230887/1‑149 (MQ=255)                                                                                                   agtgCGGATGCTTAGATGATCCCCGCGAAGATGGCAATGATTGTCATCGGGGGTTAATGTTGTGGTTGGGTTATATATGCCGTCTTCATGGGTTTTGTGCATCTTTACCTTACTGCTTTTCTCTACTAAAGGCTTGATTGTTTCCCggg                                             <  6:309684/146‑1 (MQ=255)                                                                                                    gggCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgggg                                            <  6:279806/149‑1 (MQ=255)                                                                                                    gggCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgggg                                            <  7:184504/149‑1 (MQ=255)                                                                                                                cGATGATCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgttttt                                <  8:224230‑M2/149‑117 (MQ=255)                                                                                                                 gatgatCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgtttttt                               <  3:105983‑M2/149‑118 (MQ=255)                                                                                                                 gatgatCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgtttttt                               <  3:110545‑M2/149‑118 (MQ=255)                                                                                                                  atgatCCCCGCGAAGATGGCAATGATCGTCAgcggggatcatcgaagcctccgcccttgccacactgccatttctcggcgagtccagccaaaggctctacacctggttcctggtaggctttccattctttctgacggcactgttttttc                              >  7:224230‑M2/1‑31 (MQ=255)                                                                                                                     atCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCaga                           <  1:82845/149‑1 (MQ=255)                                                                                                                         ccGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAAc                       >  2:198230/1‑149 (MQ=255)                                                                                                                              aaGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAACCTCGt                  >  7:82290/1‑149 (MQ=255)                                                                                                                                   ggCAATGATCGTCTGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCgg                                              <  4:30954/116‑1 (MQ=255)                                                                                                                                          aTCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAACCTCGTTGTGTTGCtttt      <  3:24596/149‑1 (MQ=255)                                                                                                                                          aTCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAACCTCGTTGTGTTGCtttt      >  4:24596/1‑149 (MQ=255)                                                                                                                                              tCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAACCTCGTTGTGTTGCTTTTTCGa  >  4:155162/1‑149 (MQ=255)                                                                                                                                              tCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGACAGAGAACCTCGTTGTGTTGCTTTTTCGa  >  6:102375/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   GTCAGAAAAAACAGTGCCGTCAGAAAGAATGGAAAGCCTACCAGGAACCAGGTGTAGAGCCTTTGGCTGGACTCGCCGAGA‑‑AATGGCAGTGTGGCAAGGGCGGAGGCTTCGATGATCCCCGCGAAGATGGCAATGATCGTCAGCGGGGCGACAGGTTGTGCTTGGGTCATATAGGCCGTCTCCAGCGGTTTTGTCCATCTTTACCTTACTGCTGTACTCAACTAAAGGCTGGATTGTTTCCCGGGGGAGGAATGATCGTCAGAGAACCTCGTTGTGTTGCTTTTTCGA  >  NC_002947/1248568‑1248855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.