New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1543781	34 (0.680)	3 (0.060)	3/246	NT	8.5%	coding (585/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543810	32 (0.670)					coding (614/1245 nt)	mdfA	multidrug MFS transporter

CAACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1543628‑1543781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCCCAC  <  NC_002947/1543810‑1543665                                                                                                                                                                                                                                                                                                              CAACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGG                                                                                                                                                         >  7:175130/1‑149   ACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGC                                                                                                                                                       <  2:58019/149‑1                                         GGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGC                                                                                                                  <  8:175130/148‑1                                                                      GCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCT                                                                                                                        <  3:167391/113‑1                                                                      GCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCT                                                                                                                        >  4:167391/1‑113                                                                                                                                                      GCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCC     >  8:57990/1‑148                                                                                                                                                        GTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCCCAC  <  3:129643/149‑1                                                                                                                                                                                                                                                                                                              CAACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1543628‑1543781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCCCAC  <  NC_002947/1543810‑1543665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.