New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1543781	34 (0.680)	3 (0.060)	3/246	NT	8.5%	coding (585/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543810	32 (0.670)					coding (614/1245 nt)	mdfA	multidrug MFS transporter

GCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGAT  >  NC_002947/1543635‑1543927                                                                                                                                                   |                                                                                                                                                   gCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGa                                                                                                                                                  <  5:252281/149‑1 (MQ=255)   cTTGCTGTCGCCCCTGCTCGGGGCGCTGGTTGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGTCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTTCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAgc                                                                                                                                                <  5:92546/149‑1 (MQ=255)         gTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGt                                                                                                                                           >  6:55677/1‑148 (MQ=255)          tCGCCCCTGCACGGGCCCCAGCTGGGCACCTTCCTCCTGCAATGGCTGGACTGGCGATGGCTGTTCGTGGCATTCGCCATCGGCGCGCTGCTGACAAGGCTCCAGCTGTACCGGTAGATGCCGCAAACCCTGGGCGTGGAGAGCCGTgc                                                                                                                                         >  4:124400/1‑148 (MQ=255)            gCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACg                                                                                                                                       >  4:266522/1‑149 (MQ=255)                         ccGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGc                                                                                                                          <  6:92054/149‑1 (MQ=255)                         ccGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGc                                                                                                                          <  5:10988/149‑1 (MQ=255)                            cTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGtt                                                                                                                       <  6:18789/149‑1 (MQ=255)                               gtggGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcac                                                                                                                    <  3:129643‑M2/149‑4 (MQ=255)                                  ggCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGaacgccagccgcgagccgtcacggcgctccacgc                                                                                                                  <  8:175130‑M1/148‑35 (MQ=255)                                  ggCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgc                                                                                                                  >  8:57990‑M2/1‑143 (MQ=255)                                   gCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCg                                                                                                                <  5:55677/149‑1 (MQ=255)                                       cTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGAtt                                                                                                             >  6:86983/1‑148 (MQ=255)                                          gctgctgcAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCa                                                                                                           <  5:170792/147‑1 (MQ=255)                                                gcAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGTCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCtgctgc                                                                                                   >  1:184881/1‑149 (MQ=255)                                                    tGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACt                                                                                               >  8:230658/1‑149 (MQ=255)                                                       cTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGtt                                                                                            <  3:266522/149‑1 (MQ=255)                                                               gcgcTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGaacgccagccgcgagccgtcacggcgct                                                                                                                        >  4:167391‑M1/1‑85 (MQ=255)                                                               gcgcTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGaacgccagccgcgagccgtcacggcgct                                                                                                                        <  3:167391‑M1/113‑29 (MQ=255)                                                                 gctggctgTTCGTGGCATTCGTCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTAt                                                                                  <  2:184881/149‑1 (MQ=255)                                                                            gTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCt                                                                       >  4:144172/1‑149 (MQ=255)                                                                                 aTTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCa                                                                  <  7:230658/149‑1 (MQ=255)                                                                                             cgcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCtgctgc                                                                                                   <  1:222512/104‑1 (MQ=255)                                                                                             cgcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCtgctgc                                                                                                   >  2:222512/1‑104 (MQ=255)                                                                                              gcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATg                                                                                 >  8:73894/1‑121 (MQ=255)                                                                                              gcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATg                                                                                 <  7:73894/121‑1 (MQ=255)                                                                                                ggTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTg                                                   >  4:303829/1‑149 (MQ=255)                                                                                                  tGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTgca                                                 <  5:86983/149‑1 (MQ=255)                                                                                                                ctgctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCt                                   >  1:116089/1‑149 (MQ=255)                                                                                                                   ctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCtt                                  <  2:116089/147‑1 (MQ=255)                                                                                                                    tgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTggg                               >  1:226743/1‑149 (MQ=255)                                                                                                                           gTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCg                        >  3:173402/1‑149 (MQ=255)                                                                                                                               aTGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGAt                     <  3:239726/148‑1 (MQ=255)                                                                                                                                tGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTgg                                >  7:116341/1‑136 (MQ=255)                                                                                                                                tGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTgg                                <  8:116341/136‑1 (MQ=255)                                                                                                                                 gCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGc                  >  6:32698/1‑149 (MQ=255)                                                                                                                                  ccGGAAACCCTGGGCGGGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGcc                 <  3:124400/149‑1 (MQ=255)                                                                                                                                     gAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCt              >  6:330012/1‑149 (MQ=255)                                                                                                                                     gAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCt              <  4:173402/149‑1 (MQ=255)                                                                                                                                          ccTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTc                                                       <  6:273124/103‑1 (MQ=255)                                                                                                                                          ccTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTc                                                       >  5:273124/1‑103 (MQ=255)                                                                                                                                               gCGTGaacgccagccgcgagccgtcacggcgctccacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtgcc     >  8:57990‑M1/1‑5 (MQ=255)                                                                                                                                               gCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtgcc     <  8:175130‑M2/148‑115 (MQ=255)                                                                                                                                                cGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGa   >  1:41696/1‑149 (MQ=255)                                                                                                                                                cGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGa   <  5:330012/149‑1 (MQ=255)                                                                                                                                                 gTGaacgccagccgcgagccgtcacggcgctccacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtgcccac  <  3:129643‑M1/149‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGAT  >  NC_002947/1543635‑1543927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.