New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1543781	34 (0.680)	3 (0.060)	3/246	NT	8.5%	coding (585/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543810	32 (0.670)					coding (614/1245 nt)	mdfA	multidrug MFS transporter

CTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGTGCTGCTGATTCA  >  NC_002947/1543662‑1543954                                                                                                                                                     |                                                                                                                                                 cTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGtt                                                                                                                                                  <  6:18789/149‑1 (MQ=255)    gtggGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcac                                                                                                                                               <  3:129643‑M2/149‑4 (MQ=255)       ggCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgc                                                                                                                                             >  8:57990‑M2/1‑143 (MQ=255)        gCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCg                                                                                                                                           <  5:55677/149‑1 (MQ=255)            cTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGAtt                                                                                                                                        >  6:86983/1‑148 (MQ=255)               gctgctgcAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCa                                                                                                                                      <  5:170792/147‑1 (MQ=255)                     gcAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGTCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCtgctgc                                                                                                                              >  1:184881/1‑149 (MQ=255)                         tGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACt                                                                                                                          >  8:230658/1‑149 (MQ=255)                            cTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGtt                                                                                                                       <  3:266522/149‑1 (MQ=255)                                      gctggctgTTCGTGGCATTCGTCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTAt                                                                                                             <  2:184881/149‑1 (MQ=255)                                                 gTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCt                                                                                                  >  4:144172/1‑149 (MQ=255)                                                      aTTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCa                                                                                             <  7:230658/149‑1 (MQ=255)                                                                  cgcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCtgctgc                                                                                                                              <  1:222512/104‑1 (MQ=255)                                                                  cgcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCtgctgc                                                                                                                              >  2:222512/1‑104 (MQ=255)                                                                   gcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATg                                                                                                            >  8:73894/1‑121 (MQ=255)                                                                   gcgGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATg                                                                                                            <  7:73894/121‑1 (MQ=255)                                                                     ggTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTg                                                                              >  4:303829/1‑149 (MQ=255)                                                                       tGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTgca                                                                            <  5:86983/149‑1 (MQ=255)                                                                                     ctgctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCt                                                              >  1:116089/1‑149 (MQ=255)                                                                                        ctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCtt                                                             <  2:116089/147‑1 (MQ=255)                                                                                         tgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTggg                                                          >  1:226743/1‑149 (MQ=255)                                                                                                gTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCg                                                   >  3:173402/1‑149 (MQ=255)                                                                                                    aTGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGAt                                                <  3:239726/148‑1 (MQ=255)                                                                                                     tGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTgg                                                           <  8:116341/136‑1 (MQ=255)                                                                                                     tGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTgg                                                           >  7:116341/1‑136 (MQ=255)                                                                                                      gCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGc                                             >  6:32698/1‑149 (MQ=255)                                                                                                       ccGGAAACCCTGGGCGGGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGcc                                            <  3:124400/149‑1 (MQ=255)                                                                                                          gAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCt                                         <  4:173402/149‑1 (MQ=255)                                                                                                          gAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCt                                         >  6:330012/1‑149 (MQ=255)                                                                                                               ccTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTc                                                                                  >  5:273124/1‑103 (MQ=255)                                                                                                               ccTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTc                                                                                  <  6:273124/103‑1 (MQ=255)                                                                                                                    gCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtgcc                                <  8:175130‑M2/148‑115 (MQ=255)                                                                                                                     cGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGa                              >  1:41696/1‑149 (MQ=255)                                                                                                                     cGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGa                              <  5:330012/149‑1 (MQ=255)                                                                                                                          aGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgc                                                             >  4:167391‑M2/1‑28 (MQ=255)                                                                                                                          aGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgc                                                             <  3:167391‑M2/113‑86 (MQ=255)                                                                                                                              ccGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGt                     >  6:76582/1‑149 (MQ=255)                                                                                                                                     ggCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGt              >  2:305165/1‑149 (MQ=255)                                                                                                                                        tCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGATGGCGGGCTATGGCCAGTTGCTCGGCAACCGCCGCTTCGTTTCAGGCAGCGCCGCCCTTGGCATGGTCGGATTGCCTCTGATTGGCTGCATTGTACTGTCCCCGCtg             >  6:60948/1‑147 (MQ=255)                                                                                                                                          gcgGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGtgctgc         >  3:72289/1‑149 (MQ=255)                                                                                                                                                 gCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGTGCTGCTGATTCa  <  5:32698/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGTGCTGCTGATTCA  >  NC_002947/1543662‑1543954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.