| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1580094 = | 44 (0.870) | 4 (0.080) | 4/244 | NT | 9.2% | coding (1303/3153 nt) | ttgB | efflux pump membrane protein TtgB |
| ? | NC_002947 | 1580151 = | 37 (0.780) | coding (1246/3153 nt) | ttgB | efflux pump membrane protein TtgB | |||||
GCCGCGGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTTCTGGCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1580244‑1580094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGA > NC_002947/1580151‑1580297 GCCGCGGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTTCTGGCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTC < 4:211311/149‑1GCCGCGGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTTCTGGCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTC > 7:27800/1‑149 AACGTCGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCC > 7:68904/1‑149 CGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG < 1:102236/127‑1 CGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG > 2:102236/1‑127 GAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAA < 8:68904/149‑1 CTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGG < 3:211311/149‑1 CTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGACGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGG > 3:300307/1‑149 GACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGA > 7:214676/1‑149 GACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGA < 7:221291/149‑1 GCCGCGGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTTCTGGCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTCATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAACGCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1580244‑1580094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGA > NC_002947/1580151‑1580297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |