New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1580094 =	44 (0.870)	4 (0.080)	4/244	NT	9.2%	coding (1303/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1580151 =	37 (0.780)					coding (1246/3153 nt)	ttgB	efflux pump membrane protein TtgB

ACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGA  >  NC_002947/1580003‑1580297                                                                                                                                                     |                                                                                                                                                    acacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGAc                                                                                                                                                     <  8:146877/149‑1 (MQ=255) acacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTGCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGAc                                                                                                                                                     <  5:1094/149‑1 (MQ=255)  cacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACg                                                                                                                                                    <  3:215026/149‑1 (MQ=255)    ggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGtt                                                                                                                                                  >  7:68904‑M1/89‑149 (MQ=255)     ccGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTtc                                                                                                                                                 >  2:249847/1‑149 (MQ=255)     ccGGGGAGCCGCCCAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTtc                                                                                                                                                 <  8:137730/149‑1 (MQ=255)               gccAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacga                                                                                                                                       >  1:10775/1‑149 (MQ=255)                      aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacga                                                                                                                                       <  6:142412/142‑1 (MQ=255)                      aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacga                                                                                                                                       >  5:142412/1‑142 (MQ=255)                      aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGc                                                                                                                                >  8:221291/1‑149 (MQ=255)                        cGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgt                                                                                                                              >  1:191920/1‑149 (MQ=255)                        cGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgt                                                                                                                              >  7:3796/1‑149 (MQ=255)                         gCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                                                                                             >  3:284846/1‑149 (MQ=255)                           cATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtcgt                                                                                                                           <  2:131435/149‑1 (MQ=255)                                          ggCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGa                                                                                                            >  8:197606/1‑149 (MQ=255)                                              gagaGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc                                                                                                        <  8:3796/149‑1 (MQ=255)                                                 agtaCCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc                                                                                                        >  7:50464/4‑146 (MQ=255)                                                     ccAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                                                                                             >  5:60003/1‑121 (MQ=255)                                                     ccAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                                                                                             <  6:60003/121‑1 (MQ=255)                                                              tACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGGTGGCCAGAACCATGGCGaa                                                                                         >  3:301042/1‑148 (MQ=255)                                                               aCCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCCCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAAc                                                                                        <  1:249847/148‑1 (MQ=255)                                                                  caccaGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATgg                                                                                    <  2:10775/149‑1 (MQ=255)                                                                   accaGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATgg                                                                                    >  3:58565/1‑148 (MQ=255)                                                                       gggCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAgg                                                                               <  4:284846/149‑1 (MQ=255)                                                                       gggCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAgg                                                                               <  8:50464/149‑1 (MQ=255)                                                                         gcgcCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGGGAACATGGTCAGG‑gt                                                                            <  2:14168/149‑1 (MQ=255)                                                                           gcCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTTCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑gtg                                                                           <  8:183673/148‑1 (MQ=255)                                                                              cTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGa                                                                       >  6:184640/1‑149 (MQ=255)                                                                                        aacgtcgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGcc                                                             >  7:68904‑M2/62‑149 (MQ=255)                                                                                             cgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAgg                                                                               <  1:102236‑M2/71‑1 (MQ=255)                                                                                             cgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAgg                                                                               >  2:102236‑M2/57‑127 (MQ=255)                                                                                              GAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCgcggc                                                       <  4:211311‑M1/149‑1 (MQ=255)                                                                                              GAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCgcggc                                                       >  7:27800‑M1/1‑149 (MQ=255)                                                                                                          gCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGGTGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGc                                            <  4:301042/148‑1 (MQ=255)                                                                                                          gCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGcc                                           >  3:111460/1‑149 (MQ=255)                                                                                                            ttCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGa                                                                       >  7:222372/1‑119 (MQ=255)                                                                                                            ttCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGa                                                                       <  8:222372/119‑1 (MQ=255)                                                                                                             tCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCg                                          >  6:44189/1‑147 (MQ=255)                                                                                                             gaggaaggcttgccgcccaaggaagcgaccaaacgctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGaa                                        <  8:68904‑M2/109‑1 (MQ=255)                                                                                                              ccTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAg                                       >  7:304852/1‑149 (MQ=255)                                                                                                                  gggCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGt                                     <  7:197606/147‑1 (MQ=255)                                                                                                                      ggcAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAg                               >  5:6457/1‑149 (MQ=255)                                                                                                                       gcAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGc                              <  4:58565/149‑1 (MQ=255)                                                                                                                             cTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTGAGGCGTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATac                         <  1:246167/149‑1 (MQ=255)                                                                                                                                 cTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCg                    <  8:304852/149‑1 (MQ=255)                                                                                                                                  tCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAg                               <  7:40033/137‑1 (MQ=255)                                                                                                                                  tCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAg                               >  8:40033/1‑137 (MQ=255)                                                                                                                                        aTGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATg                                                                                              >  4:298747/1‑69 (MQ=255)                                                                                                                                        aTGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATg                                                                                              <  3:298747/69‑1 (MQ=255)                                                                                                                                          gACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGCTGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCa           >  7:47142/1‑149 (MQ=255)                                                                                                                                           aCCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAgg                                                >  5:258406/1‑111 (MQ=255)                                                                                                                                           aCCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAgg                                                <  6:258406/111‑1 (MQ=255)                                                                                                                                                ctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCAtggtgg     <  3:211311‑M2/144‑1 (MQ=255)                                                                                                                                                ctcgaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGACGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCAtggtgg     >  3:300307‑M2/6‑149 (MQ=255)                                                                                                                                                   gaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGa  >  7:214676‑M2/3‑149 (MQ=255)                                                                                                                                                   gaCGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGa  <  7:221291‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGG‑GTGTTGATGCTGAAGCCCGCGGCGGCAAGGATGCCGAAGGTACCCAGCAATACCACCGGTACGGTCATGGTGGTGA  >  NC_002947/1580003‑1580297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.