New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1580094 =	44 (0.870)	4 (0.080)	4/244	NT	9.2%	coding (1303/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1580151 =	37 (0.780)					coding (1246/3153 nt)	ttgB	efflux pump membrane protein TtgB

CCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGA  >  NC_002947/1579947‑1580228                                                                                                                                                    |                                                                                                                                       tcaccaccatgaccgtaccggtggtattgctgggtaccttcggcatccttgccgccgcgggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTc                                                                                                                                       <  7:221291‑M1/2‑1 (MQ=255) tcaccaccatgaccgtaccggtggtattgctgggtaccttcggcatccttgccgccgcgggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTc                                                                                                                                       >  7:214676‑M1/148‑149 (MQ=255)  cAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATc                                                                                                                                       >  1:109867/1‑148 (MQ=255)    ccaccatgaccgtaccggtggtattgctgggtaccttcggcatccttgccgtcgcgggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAg                                                                                                                                    >  3:300307‑M1/145‑149 (MQ=255)    ccaccatgaccgtaccggtggtattgctgggtaccttcggcatccttgccgccgcgggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAg                                                                                                                                    <  3:211311‑M1/5‑1 (MQ=255)                   tGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTcc                                                                                                                     <  5:145893/149‑1 (MQ=255)                     gCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCtt                                                                                                                   <  1:143173/149‑1 (MQ=255)                     gCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCt                                                                                                                    <  2:312398/148‑1 (MQ=255)                      ccGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTg                                                                                                                  >  4:212520/1‑149 (MQ=255)                       cGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTgg                                                                                                                 <  3:212520/149‑1 (MQ=255)                        gagaCGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTggg                                                                                                                <  7:121335/149‑1 (MQ=255)                          gaCGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGggcg                                                                                                              >  1:131435/1‑149 (MQ=255)                                       ttcggcatccttgccgccgcgggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTc                                                                                                 <  8:68904‑M1/40‑1 (MQ=255)                                            cTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACa                                                                                            >  4:178802/1‑149 (MQ=255)                                                cGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAc                                                                                        <  3:178802/149‑1 (MQ=255)                                                     gATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCt                                                                                   <  8:260472/149‑1 (MQ=255)                                                        cacaCCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCCCCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTACTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGa                                                                                >  1:95944/1‑149 (MQ=255)                                                        cacaCCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTCTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGa                                                                                >  2:246167/1‑149 (MQ=255)                                                         acacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGa                                                                                <  2:109867/148‑1 (MQ=255)                                                         acacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGAc                                                                               <  8:146877/149‑1 (MQ=255)                                                         acacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTGCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGAc                                                                               <  5:1094/149‑1 (MQ=255)                                                          cacCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACg                                                                              <  3:215026/149‑1 (MQ=255)                                                            ggcttcagcatcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGtt                                                                            >  7:68904‑M1/89‑149 (MQ=255)                                                             ccGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTtc                                                                           >  2:249847/1‑149 (MQ=255)                                                             ccGGGGAGCCGCCCAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTtc                                                                           <  8:137730/149‑1 (MQ=255)                                                                       gccAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacga                                                                 >  1:10775/1‑149 (MQ=255)                                                                             cctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCg                                                                                 >  2:102236‑M1/72‑127 (MQ=255)                                                                             cctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgTCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCg                                                                                 <  1:102236‑M1/56‑1 (MQ=255)                                                                              aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGc                                                                                    >  5:94735/1‑123 (MQ=255)                                                                              aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGc                                                                                    <  6:94735/123‑1 (MQ=255)                                                                              aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacga                                                                 >  5:142412/1‑142 (MQ=255)                                                                              aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacga                                                                 <  6:142412/142‑1 (MQ=255)                                                                              aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGc                                                          >  8:221291/1‑149 (MQ=255)                                                                                cGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgt                                                        >  7:3796/1‑149 (MQ=255)                                                                                cGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgt                                                        >  1:191920/1‑149 (MQ=255)                                                                                 gCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                       >  3:284846/1‑149 (MQ=255)                                                                                   cATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtcgt                                                     <  2:131435/149‑1 (MQ=255)                                                                                         cagcagTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCg                                                                                                >  1:93252/1‑100 (MQ=255)                                                                                         cagcagTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCg                                                                                                <  2:93252/100‑1 (MQ=255)                                                                                                  ggCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGa                                      >  8:197606/1‑149 (MQ=255)                                                                                                      gagaGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc                                  <  8:3796/149‑1 (MQ=255)                                                                                                         agtaCCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc                                  >  7:50464/4‑146 (MQ=255)                                                                                                             ccAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                       <  6:60003/121‑1 (MQ=255)                                                                                                             ccAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                       >  5:60003/1‑121 (MQ=255)                                                                                                                      tACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGGTGGCCAGAACCATGGCGaa                   >  3:301042/1‑148 (MQ=255)                                                                                                                       aCCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCCCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAAc                  <  1:249847/148‑1 (MQ=255)                                                                                                                          caccaGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATgg              <  2:10775/149‑1 (MQ=255)                                                                                                                           accaGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATgg              >  3:58565/1‑148 (MQ=255)                                                                                                                               gggCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAgg         <  4:284846/149‑1 (MQ=255)                                                                                                                               gggCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAgg         <  8:50464/149‑1 (MQ=255)                                                                                                                                 gcgcCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGGGAACATGGTCAGGgt       <  2:14168/149‑1 (MQ=255)                                                                                                                                   gcCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTTCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGgtg      <  8:183673/148‑1 (MQ=255)                                                                                                                                      cTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGa  >  6:184640/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                       CCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGA  >  NC_002947/1579947‑1580228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.