New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1941523	58 (1.150)	4 (0.080)	4/244	NT	6.6%	coding (65/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
	?	NC_002947	= 1941539	59 (1.240)					coding (81/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX

ATATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1941370‑1941523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccat‑AGC‑CTGTGCAGCGCTCATGGCCATTACCAGGGCGGTGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGAGATTGCATCATCTTCCTGCAACACAAGACGACCTGATCCAGCT  <  NC_002947/1941539‑1941392                                                                                                                                                                                                                                                                                                                  ATATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATG                                                                                                                                                             >  3:67176/1‑149  TATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGG                                                                                                                                                            <  1:108215/149‑1   ATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGC                                                                                                                                                           >  8:187126/1‑149       GGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAT                                                                                                                                                        >  3:119615/1‑148                  GTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCGCCGCCCTGGTAATGGCCAT‑AGC‑CTGTGCAGC                                                                                                                                          >  7:237168/1‑149                                AGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATG                                                                                                                                                             >  7:121687/1‑118                                AGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATG                                                                                                                                                             <  8:121687/118‑1                                                                                                                                           CCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCATTACCAGGGCGGTGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGA                                             >  3:288569/1‑121                                                                                                                                           CCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCATTACCAGGGCGGTGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGA                                             <  4:288569/121‑1                                                                                                                                            CCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCATTACCAGGGCGGCGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGAGATTGCATCATCTTCCTGCAACACAAGAC                >  8:237168/1‑149                                                                                                                                                       CCAT‑AGC‑CTGTGCAGCGCTCATGGCCATTACCAGGGCGGTGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGAGATTGCATCATCTTCCTGCAACACAAGACGACCTGATC       >  7:45765/1‑147                                                                                                                                                          T‑AGC‑CTGTGCAGCGCTCATGGCCATTACCAGGGCGGTGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGAGATTGCATCATCTTCCTGCAACACAAGACGACCTGATCCAGCT  <  4:142709/149‑1                                                                                                                                                                                                                                                                                                                  ATATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1941370‑1941523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccat‑AGC‑CTGTGCAGCGCTCATGGCCATTACCAGGGCGGTGCCCACGCCCAGGAAACGTCGCATTTTCTTCAAAGTTGCCATCAAAGCATCCCCTCGTCAGGTCTTGGAGATTGCATCATCTTCCTGCAACACAAGACGACCTGATCCAGCT  <  NC_002947/1941539‑1941392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.