New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2034885 =	48 (0.950)	5 (0.110)	5/242	NT	11.4%	intergenic (+701/+740)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
	?	NC_002947	2034921 =	33 (0.700)					intergenic (+737/+704)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein

GTGAGGTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2035038‑2034885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgatctTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAA  >  NC_002947/2034921‑2035054                                                                                                                                                                                                                                                                                                   GTGAGGTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGC                                                                                                                                             <  3:119646/149‑1  gGAGGTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCG                                                                                                                                            <  8:209053/148‑1     GGTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATC                                                                                                                                         <  4:12724/149‑1      GTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCT                                                                                                                                        >  5:116414/1‑149      GTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTAAGAAATTTCTACCAAGATCGCACCGCTTGTCAGCGCCA‑GCTTTGCGATCT                                                                                                                                        >  6:250902/1‑149                              TGCCGTAACATAGGATTGCGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGT                                                                                                                 >  5:168543/1‑148                              TGCCGTAACATAGGATTGCGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGT                                                                                                                 <  6:168543/148‑1                                                                                                                    CCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGT                           >  2:105855/1‑148                                                                                                                     CAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTG                          >  2:280522/1‑148                                                                                                                                            CCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAA  <  1:280522/149‑1                                                                                                                                                                                                                                                                                                   GTGAGGTTCACTGGCTGTCTATAGGGTGATGCCGTAACATAGGATTGTGAATATCACGCTTTACGCAAAAGGTCTTTGTTTACTGGCCATTTGACACTCAGTTACGAAATTTCTACCAAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2035038‑2034885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgatctTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAA  >  NC_002947/2034921‑2035054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.