New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2034885 =	48 (0.950)	5 (0.110)	5/242	NT	11.4%	intergenic (+701/+740)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
	?	NC_002947	2034921 =	33 (0.700)					intergenic (+737/+704)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein

GCTCCAAAGCATGCGCAAAGTGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAC  >  NC_002947/2034742‑2035033                                                                                                                                                |                                                                                                                                                      gCTCCAAAGCATGCGCAAAGTGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGAt                                                                                                                                                    <  6:263044/147‑1 (MQ=255)     cAAAGCATGCGCAATGTGGGTTAGAGGGCTTGCGTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCTCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGGTGTGCCGGGTGAAGGTTGGCATCCAGATCGCaaa                                                                                                                                              <  5:139230/149‑1 (MQ=255)      aaaGCATGCGCAAAGTGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAg                                                                                                                                             >  4:267632/1‑149 (MQ=255)          tttcttgatagaaagggtgaggttcactggctgtctatagggtgatgccgtaacataggattgtgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaAGATCGCAAAGC‑Tgg                                                                                                                                        <  1:280522‑M1/15‑1 (MQ=255)            tGCGCAAAGTGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGgcg                                                                                                                                      <  3:267632/149‑1 (MQ=255)                cAAAGTGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGa                                                                                                                                  <  3:251089/149‑1 (MQ=255)                     tGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACAcgc                                                                                                                             <  3:260207/149‑1 (MQ=255)                        gTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGt                                                                                                                          >  8:132125/1‑149 (MQ=255)                             acGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATGGCAAAGC‑TGGCGCTGACACGCGGTGCgct                                                                                                                     >  3:230403/1‑147 (MQ=255)                               ggCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGc                                                                                                                                                 <  8:33789/120‑1 (MQ=255)                               ggCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGc                                                                                                                                                 >  7:33789/1‑120 (MQ=255)                               ggCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGac                                                                                                                                 >  4:252668/1‑135 (MQ=255)                               ggCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGac                                                                                                                                 <  3:252668/135‑1 (MQ=255)                                 cTTGCCTACTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCATGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGAAACGCGGTGAGAACTTg                                                                                                                 >  5:250902/1‑149 (MQ=255)                                  cactggctgtctatagggtgatgccgtaacataggattgtgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTg                                                                                                                 >  2:280522‑M1/111‑148 (MQ=255)                                   actggctgtctatagggtgatgccgtaacataggattgtgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTgg                                                                                                                >  2:105855‑M1/110‑148 (MQ=255)                                          ttCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTg                                                                                                                 >  3:72280/1‑140 (MQ=255)                                          ttCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTg                                                                                                                 <  4:72280/140‑1 (MQ=255)                                            cGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAAttt                                                                                                       <  3:29320/148‑1 (MQ=255)                                              aCTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGt                                                                                                    <  2:65205/149‑1 (MQ=255)                                                  gCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACt                                                                                                >  3:90258/1‑149 (MQ=255)                                                   cTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTg                                                                                                                                   >  8:41872/1‑113 (MQ=255)                                                   cTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTg                                                                                                                                   <  7:41872/113‑1 (MQ=255)                                                       gggCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAgtg                                                                                           <  8:183625/149‑1 (MQ=255)                                                        ggaaccTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGAAGATAGATCAAGAGCTCTGCCCGGTGAAGGTTGGCAACCAGATCGCAAAGC‑TGTCGATGAAACGCGGTACGATCTTGGTAGAAATTTCg                                                                                                     >  6:94234/5‑138 (MQ=255)                                                        ggCCCCTGCTCGTGTGCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGGAGTTAGATCCTGTGCTGTGCCGGGTGAAGTTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCg                                                                                                     <  5:94234/138‑1 (MQ=255)                                                           cccTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCAGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCaa                                                                                       <  5:327598/149‑1 (MQ=255)                                                               gCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATgg                                                                                   >  6:332165/1‑149 (MQ=255)                                                                     gtCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGt                                                                              >  8:6378/1‑148 (MQ=255)                                                                      tCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTa                                                                             <  7:132125/148‑1 (MQ=255)                                                                         gCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACAcg                                                                                                                              <  5:37917/96‑1 (MQ=255)                                                                         gCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACAcg                                                                                                                              >  6:37917/1‑96 (MQ=255)                                                                              ccGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGAc                                                                    >  5:190797/1‑149 (MQ=255)                                                                                gagaCCCCTCTGCGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGAcgt                                                                  <  4:301527/149‑3 (MQ=255)                                                                                     cccTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGc                                                             <  4:90258/149‑1 (MQ=255)                                                                                     cccTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGc                                                             <  3:119170/149‑1 (MQ=255)                                                                                        tctGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTc                                                                                         <  2:111355/118‑1 (MQ=255)                                                                                        tctGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGt                                                           >  6:116414/1‑148 (MQ=255)                                                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGa                                                                     >  7:279950/1‑132 (MQ=255)                                                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGa                                                                     <  8:279950/132‑1 (MQ=255)                                                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGt                                                    >  1:73758/1‑149 (MQ=255)                                                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGt                                                    >  3:199605/1‑149 (MQ=255)                                                                                                  gctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGata                                                <  2:73758/149‑1 (MQ=255)                                                                                                                 ccTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCTTAAAGCGTGATATTCACAATCCTATGt                                 >  3:104389/1‑149 (MQ=255)                                                                                                                  ctgtgctgtgCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGt                                 >  5:285361/1‑148 (MQ=255)                                                                                                                  ctgtgctgtgCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAAACCTATGt                                 >  8:36233/1‑148 (MQ=255)                                                                                                                         actcagttacgaaatttctaccaAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCGCAATCCTATGTTACGGCa                          <  6:168543‑M1/125‑1 (MQ=255)                                                                                                                         actcagttacgaaatttctaccaAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCGCAATCCTATGTTACGGCa                          >  5:168543‑M1/24‑148 (MQ=255)                                                                                                                             cGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCAcc                     >  2:99338/1‑149 (MQ=255)                                                                                                                              gggTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCAccc                    >  5:240801/1‑149 (MQ=255)                                                                                                                              gggTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAAACCTATGTTACGGCATCAccc                    <  7:36233/149‑1 (MQ=255)                                                                                                                                gTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCta                  <  1:99338/149‑1 (MQ=255)                                                                                                                                gTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGAGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCta                  <  4:199605/149‑1 (MQ=255)                                                                                                                                          gCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCa        >  7:160338/1‑149 (MQ=255)                                                                                                                                                AGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAc  >  5:116414‑M1/1‑149 (MQ=255)                                                                                                                                                AGATCGCAAAGC‑TGGCGCTGACAAGCGGTGCGATCTTGGTAGAAATTTCTTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAc  >  6:250902‑M1/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                      GCTCCAAAGCATGCGCAAAGTGGGTTACACGGCTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAC  >  NC_002947/2034742‑2035033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.