New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2034885 =	48 (0.950)	5 (0.110)	5/242	NT	11.4%	intergenic (+701/+740)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
	?	NC_002947	2034921 =	33 (0.700)					intergenic (+737/+704)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein

CTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAAGTCAGA  >  NC_002947/2034774‑2035060                                                                                                                                                     |                                                                                                                                            cTTGCCTACTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCATGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGAAACGCGGTGAGAACTTg                                                                                                                                            >  5:250902/1‑149 (MQ=255)  cactggctgtctatagggtgatgccgtaacataggattgtgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTg                                                                                                                                            >  2:280522‑M1/111‑148 (MQ=255)   actggctgtctatagggtgatgccgtaacataggattgtgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTgg                                                                                                                                           >  2:105855‑M1/110‑148 (MQ=255)          ttCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTg                                                                                                                                            <  4:72280/140‑1 (MQ=255)          ttCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTg                                                                                                                                            >  3:72280/1‑140 (MQ=255)            cGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAAttt                                                                                                                                  <  3:29320/148‑1 (MQ=255)              aCTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGt                                                                                                                               <  2:65205/149‑1 (MQ=255)                  gCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACt                                                                                                                           >  3:90258/1‑149 (MQ=255)                       gggCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAgtg                                                                                                                      <  8:183625/149‑1 (MQ=255)                        tgccgtaacataggattgcgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaagatcgcaaagctggcgctgacacgcggtgcgatctTGGTAGAAATTTCGTAACTGAgt                                                                                                                       >  5:168543‑M2/126‑148 (MQ=255)                        tgccgtaacataggattgcgaatatcacgctttacgcaaaaggtctttgtttactggccatttgacactcagttacgaaatttctaccaagatcgcaaagctggcgctgacacgcggtgcgatctTGGTAGAAATTTCGTAACTGAgt                                                                                                                       <  6:168543‑M2/23‑1 (MQ=255)                        ggaaccTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGAAGATAGATCAAGAGCTCTGCCCGGTGAAGGTTGGCAACCAGATCGCAAAGC‑TGTCGATGAAACGCGGTACGATCTTGGTAGAAATTTCg                                                                                                                                >  6:94234/5‑138 (MQ=255)                        ggCCCCTGCTCGTGTGCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGGAGTTAGATCCTGTGCTGTGCCGGGTGAAGTTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCg                                                                                                                                <  5:94234/138‑1 (MQ=255)                           cccTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCAGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCaa                                                                                                                  <  5:327598/149‑1 (MQ=255)                               gCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATgg                                                                                                              >  6:332165/1‑149 (MQ=255)                                     gtCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGt                                                                                                         >  8:6378/1‑148 (MQ=255)                                      tCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTa                                                                                                        <  7:132125/148‑1 (MQ=255)                                              ccGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGAc                                                                                               >  5:190797/1‑149 (MQ=255)                                                gagaCCCCTCTGCGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGAcgt                                                                                             <  4:301527/149‑3 (MQ=255)                                                     cccTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGc                                                                                        <  4:90258/149‑1 (MQ=255)                                                     cccTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGc                                                                                        <  3:119170/149‑1 (MQ=255)                                                        tctGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTc                                                                                                                    <  2:111355/118‑1 (MQ=255)                                                        tctGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGt                                                                                      >  6:116414/1‑148 (MQ=255)                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGa                                                                                                >  7:279950/1‑132 (MQ=255)                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGa                                                                                                <  8:279950/132‑1 (MQ=255)                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGt                                                                               >  1:73758/1‑149 (MQ=255)                                                              gctggctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGt                                                                               >  3:199605/1‑149 (MQ=255)                                                                  gctgAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGata                                                                           <  2:73758/149‑1 (MQ=255)                                                                                 ccTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCTTAAAGCGTGATATTCACAATCCTATGt                                                            >  3:104389/1‑149 (MQ=255)                                                                                  ctgtgctgtgCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGt                                                            >  5:285361/1‑148 (MQ=255)                                                                                  ctgtgctgtgCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAAACCTATGt                                                            >  8:36233/1‑148 (MQ=255)                                                                                         actcagttacgaaatttctaccaAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCGCAATCCTATGTTACGGCa                                                     >  5:168543‑M1/24‑148 (MQ=255)                                                                                         actcagttacgaaatttctaccaAGATCGCACCGCGTGTCAGCGCCA‑GCTTTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCGCAATCCTATGTTACGGCa                                                     <  6:168543‑M1/125‑1 (MQ=255)                                                                                             cGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCAcc                                                >  2:99338/1‑149 (MQ=255)                                                                                              gggTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCAccc                                               >  5:240801/1‑149 (MQ=255)                                                                                              gggTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAAACCTATGTTACGGCATCAccc                                               <  7:36233/149‑1 (MQ=255)                                                                                                gTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCta                                             <  1:99338/149‑1 (MQ=255)                                                                                                gTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGAGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCta                                             <  4:199605/149‑1 (MQ=255)                                                                                                          gCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCa                                   >  7:160338/1‑149 (MQ=255)                                                                                                              ccaagatcgcaccgcgtgtcagcgccagctttgcgatctTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGt                                 >  2:105855‑M2/40‑148 (MQ=255)                                                                                                               caagatcgcaccgcgtgtcagcgccagctttgcgatctTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTg                                >  2:280522‑M2/39‑148 (MQ=255)                                                                                                                AGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAc                             >  5:116414‑M1/1‑149 (MQ=255)                                                                                                                AGATCGCAAAGC‑TGGCGCTGACAAGCGGTGCGATCTTGGTAGAAATTTCTTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAc                             >  6:250902‑M1/1‑149 (MQ=255)                                                                                                                 GATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAAcc                            <  4:12724‑M1/149‑1 (MQ=255)                                                                                                                    CGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCtcc                         <  8:209053‑M1/149‑2 (MQ=255)                                                                                                                     GCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCAc                        <  3:119646‑M1/149‑1 (MQ=255)                                                                                                                           c‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTc                  <  6:190797/149‑1 (MQ=255)                                                                                                                                   tGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATc              >  3:100400/1‑146 (MQ=255)                                                                                                                                     acacGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGa          >  6:228365/1‑148 (MQ=255)                                                                                                                                      ccagctttgcgatctTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGaaa        <  1:280522‑M2/134‑1 (MQ=255)                                                                                                                                           ggTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAACGTCag   <  6:240801/149‑1 (MQ=255)                                                                                                                                            gTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAAGTCaga  <  8:160338/149‑1 (MQ=255)                                                                                                                                            gTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAAGTCaga  <  3:12724/149‑1 (MQ=255)                                                                                                                                            gTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAAGTCaga  <  4:100400/149‑1 (MQ=255)                                                                                                                                            gTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAAGTCaga  <  5:228365/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                            CTTGCCTATTTCGACTAGCTAAGGGCCCCTGCTCGTGTCCGCCTGCCGAGACCCCTCTGAGGCTGGCTGAGCAGTTAGATCCTGTGCTGTGCCGGGTGAAGGTTGGCATCCAGATCGCAAAGC‑TGGCGCTGACACGCGGTGCGATCTTGGTAGAAATTTCGTAACTGAGTGTCAAATGGCCAGTAAACAAAGACCTTTTGCGTAAAGCGTGATATTCACAATCCTATGTTACGGCATCACCCTATAGACAGCCAGTGAACCTCACCCTTTCTATCAAGAAAGTCAGA  >  NC_002947/2034774‑2035060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.