| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2069690 = | NA (NA) | 4 (0.080) | 4/244 | NT | NA | coding (64/1422 nt) | PP_1846 | group II intron‑encoding maturase |
| ? | NC_002947 | 2069738 = | NA (NA) | coding (112/1422 nt) | PP_1846 | group II intron‑encoding maturase | |||||
ACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2069844‑2069690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacagtGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGT > NC_002947/2069738‑2069883 ACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGAT < 4:42202/149‑1ACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCCCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGAGATTCGGGAT < 2:125111/149‑1 CACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGA < 4:39618/149‑1 CGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTCTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACA < 8:296018/149‑1 GCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAG > 3:146036/1‑149 GCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAG > 3:261115/1‑149 CACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCG > 1:138952/1‑94 CACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCG < 2:138952/94‑1 ACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGC < 2:28075/115‑1 ACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGC > 1:28075/1‑115 TGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGA > 5:74400/1‑149 TGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAA < 3:103345/123‑1 TGACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAA > 4:103345/1‑123 ACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGCGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGA < 8:213087/147‑1 ACAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACG < 2:17936/149‑1 CAGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCCCCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCTTGACGG > 5:232945/1‑149 AGTGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGT < 2:234909/149‑1 TGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGG < 2:323137/128‑1 TGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGG > 1:323137/1‑128 TGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTC > 3:255422/1‑85 TGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTC < 4:255422/85‑1 ACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCGCTGACGCCGCCGGCACCTTTGCACTGTCAGGCATCACCCTCGGCTTCTGGCCGGGATTCGGGATGACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2069844‑2069690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacagtGCAAAGGTGCCGGCGGCGTCAGCGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGT > NC_002947/2069738‑2069883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |