New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2069690 =	NA (NA)	4 (0.080)	4/244	NT	NA	coding (64/1422 nt)	PP_1846	group II intron‑encoding maturase
	?	NC_002947	2069738 =	NA (NA)					coding (112/1422 nt)	PP_1846	group II intron‑encoding maturase

CCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCATCCCGAATCCCGGCCAGAAGCCGAGGGTGATGCCTGACAGTGCAAAGGTGCCGGCGGC  >  NC_002947/2069606‑2069754                                                                                                                                     |                 cccccaAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGGCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCATCCCGAATCCCGGCCAGAAGCCGAGGGTGATGCCTGACAGTGCAAAGGTGCCggcggc  <  6:242937/146‑1 (MQ=1)                                                                                                                                     |                 CCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCATCCCGAATCCCGGCCAGAAGCCGAGGGTGATGCCTGACAGTGCAAAGGTGCCGGCGGC  >  NC_002947/2069606‑2069754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.