New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2129661 =	44 (0.870)	6 (0.130)	6/244	NT	13.0%	intergenic (‑15/+42)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD
	?	NC_002947	2129695 =	39 (0.820)					intergenic (‑49/+8)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD

CTGCAGGTGAGTTGGGGCGAACAGCCCAACGCCGGCTGCCAGGTGCATCTCGATGAACTGGACGCTCCCGTCGTCGACGGCTATCGCCAGCAAACCCTGACCTGTATCTAGCAACCTTCACGCGGTGCAGCCTTACCCACGGCCGTACCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2129813‑2129661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGT  >  NC_002947/2129695‑2129837                                                                                                                                                                                                                                                                                                          CTGCAGGTGAGTTGGGGCTAACAGCCCAACGCCGGCTGCCAGGTGCATCTCGATGAACTGGACGCTCCCGTCGTCGACGGCTATCGCCAGCAAACCCTGACCTGTATCTAGCAACCTTCACGCGGTGCAGCCTTACCCACGGCCGTACC                                                                                                                                                     <  2:102265/149‑1    CAGGTGAGTTGGGGCGAACAGCCCAACGCCGGCTGCCAGGTGCATCTCGATGAACTGGACGCTCCCGTCGTCGACTGCTATCGCCAGCAAACCCTGACCTGTATCTAGCAACCTTCACGCGGTGCAGCCTTACCCACGGCCGTACCG                                                                                                                                                    <  2:76685/147‑1                                                                                                                        ACGCGGTGCAGCCTTACCCACGGCCGTACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTC                                                                                      <  1:263293/93‑1                                                                                                                        ACGCGGTGCAGCCTTACCCACGGCCGTACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTC                                                                                      >  2:263293/1‑93                                                                                                                         CGCGGTGCAGCCTTACCCACGGCCGTACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTT                                                     <  7:161305/125‑1                                                                                                                         CGCGGTGCAGCCTTACCCACCGCCGTACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTT                                                     >  8:161305/1‑125                                                                                                                                CAGCCTTACCCACGGCCGTACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGG                                                  <  5:51346/121‑1                                                                                                                                CAGCCTTACCCACGGCCGTACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGG                                                  >  6:51346/1‑121                                                                                                                                                    CCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGT  <  4:27456/149‑1                                                                                                                                                     CGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGT  >  8:148724/1‑148                                                                                                                                                                                                                                                                                                          CTGCAGGTGAGTTGGGGCGAACAGCCCAACGCCGGCTGCCAGGTGCATCTCGATGAACTGGACGCTCCCGTCGTCGACGGCTATCGCCAGCAAACCCTGACCTGTATCTAGCAACCTTCACGCGGTGCAGCCTTACCCACGGCCGTACCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2129813‑2129661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGT  >  NC_002947/2129695‑2129837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.