New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2129661 =	44 (0.870)	6 (0.130)	6/244	NT	13.0%	intergenic (‑15/+42)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD
	?	NC_002947	2129695 =	39 (0.820)					intergenic (‑49/+8)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD

GCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGT  >  NC_002947/2129548‑2129837                                                                                                                                                    |                                                                                                                                               gCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTg                                                                                                                                                >  6:148800/1‑148 (MQ=255)  cAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGaa                                                                                                                                              <  2:3742/149‑1 (MQ=255)     cGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGATTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGt                                                                                                                                           <  4:280945/149‑1 (MQ=255)     cGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGt                                                                                                                                           <  5:199924/149‑1 (MQ=255)             gtctACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGa                                                                                                                                    >  6:39474/1‑148 (MQ=255)                  ccGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAgg                                                                                                                              >  2:301387/1‑149 (MQ=255)                          gccatggcGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGtt                                                                                                                      >  8:260469/1‑149 (MQ=255)                          gccatggcGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGtt                                                                                                                      >  3:68559/1‑149 (MQ=255)                             atggcGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGc                                                                                                                   >  6:7185/1‑149 (MQ=255)                                      gCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAg                                                                                                          >  4:163969/1‑149 (MQ=255)                                       cAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGc                                                                                                         <  5:7185/149‑1 (MQ=255)                                          ccGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGt                                                                                                      <  5:148800/149‑1 (MQ=255)                                           cGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTc                                                                                                     <  5:108785/149‑1 (MQ=255)                                                 tGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGCGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCgacgac                                                                                               <  1:263453/149‑1 (MQ=255)                                                    cAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACgg                                                                                             >  2:318397/1‑148 (MQ=255)                                                     agagTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGa                                                                                           <  3:163969/149‑1 (MQ=255)                                                                   cgcCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATc                                                                             <  4:68559/149‑1 (MQ=255)                                                                    gcCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCg                                                                            <  7:260469/149‑1 (MQ=255)                                                                     ccTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATc                                                                             >  6:304849/1‑147 (MQ=255)                                                                              gggTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTg                                                                                                                 <  2:97162/102‑1 (MQ=255)                                                                              gggTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTg                                                                                                                 >  1:97162/1‑102 (MQ=255)                                                                              gggTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCt                                                                  <  1:301387/149‑1 (MQ=255)                                                                                gTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTgg                                                                <  1:64935/149‑1 (MQ=255)                                                                                 tCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTc                                                                                                     >  1:202215/1‑111 (MQ=255)                                                                                 tCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTc                                                                                                     <  2:202215/111‑1 (MQ=255)                                                                                 tCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTgg                                                                >  5:255403/1‑148 (MQ=255)                                                                                      ttgATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCg                                                          >  6:70327/1‑149 (MQ=255)                                                                                      ttgATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCg                                                          <  5:39474/149‑1 (MQ=255)                                                                                            tttttCATGGGTGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTg                                                    <  8:12078/149‑1 (MQ=255)                                                                                            tttttCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGtt                                                     <  4:241851/148‑1 (MQ=255)                                                                                               ttCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTggg                                                  <  5:70327/148‑1 (MQ=255)                                                                                               ttCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTggg                                                  <  1:318397/148‑1 (MQ=255)                                                                                                                  acgcggtgcagccttacccacggccgtaccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTc                                                                                      <  1:263293‑M2/59‑1 (MQ=255)                                                                                                                  acgcggtgcagccttacccacggccgtaccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTc                                                                                      >  2:263293‑M2/35‑93 (MQ=255)                                                                                                                   cgcggtgcagccttacccacggccgtaccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGtt                                                     <  7:161305‑M2/92‑1 (MQ=255)                                                                                                                   cgcggtgcagccttacccaccgccgtaccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGtt                                                     >  8:161305‑M2/34‑125 (MQ=255)                                                                                                                     CGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCAGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTg                             <  2:76685‑M1/147‑1 (MQ=255)                                                                                                                      GGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTAGCCCCAACTCACCTGCAg                          <  2:102265‑M1/149‑1 (MQ=255)                                                                                                                         aCGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCgg                       >  5:97655/1‑149 (MQ=255)                                                                                                                          cagccttacccacggccgtaccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTggg                                                  >  6:51346‑M2/27‑121 (MQ=255)                                                                                                                          cagccttacccacggccgtaccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTggg                                                  <  5:51346‑M2/95‑1 (MQ=255)                                                                                                                           ggCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGtt                     >  3:27456/1‑149 (MQ=255)                                                                                                                            gCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTAATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTg                    <  6:97655/149‑1 (MQ=255)                                                                                                                             ccGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGccc                                        >  4:234017/1‑128 (MQ=255)                                                                                                                             ccGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGccc                                        <  3:234017/128‑1 (MQ=255)                                                                                                                             ccGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCGGCAGCGGTTGc                   >  4:222900/1‑149 (MQ=255)                                                                                                                                      aGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCctggctg          <  6:255403/149‑1 (MQ=255)                                                                                                                                       ggCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGcc                                         <  3:263207/117‑1 (MQ=255)                                                                                                                                       ggCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGcc                                         >  4:263207/1‑117 (MQ=255)                                                                                                                                              ccgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGt  <  4:27456‑M2/143‑1 (MQ=255)                                                                                                                                               cgcgtGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGt  >  8:148724‑M2/6‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                               GCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGGCTGTTCGCCCCAACTCACCTGCAGCGGTTGCTCCTGGCTGGGGTTGGT  >  NC_002947/2129548‑2129837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.