New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2129661 =	44 (0.870)	6 (0.130)	6/244	NT	13.0%	intergenic (‑15/+42)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD
	?	NC_002947	2129695 =	39 (0.820)					intergenic (‑49/+8)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD

TTGAGGTTTGCGCTGGTCAGCTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGG  >  NC_002947/2129516‑2129789                                                                                                                                                  |                                                                                                                                 ttGAGGTTTGCGCTGGTCAGCTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGAcgc                                                                                                                               >  3:241851/1‑149 (MQ=255)   accaaccccagccaggagcaaccgctgcaggtgagttggggcgaacagcccaacgccggctgccaggtgcatctcgatgaactggacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcAcgcg                                                                                                                              >  8:148724‑M1/144‑148 (MQ=255)   accaaccccagccaggagcaaccgctgcaggtgagttggggcgaacagcccaacgccggctgccaggtgcatctcgatgaactggacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCgg                                                                                                                             <  4:27456‑M1/6‑1 (MQ=255)            gcTGGTCAGCTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGt                                                                                                                    <  8:96015/149‑1 (MQ=255)             cTGGTCAGCTGTTCGGACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTg                                                                                                                   <  5:293475/149‑1 (MQ=255)                gTCAGCTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTggg                                                                                                                 >  6:199924/1‑148 (MQ=255)                   aGCTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAg                                                                                                             >  7:12078/1‑149 (MQ=255)                     cTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGTAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCgg                                                                                                                             <  8:119370/131‑1 (MQ=255)                     cTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCgg                                                                                                                             >  7:119370/1‑131 (MQ=255)                     cTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGc                                                                                                           >  1:3742/1‑149 (MQ=255)                           gAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGTGGTACGGCCGTGGGTAAGGCTGCAcc                                                                                                     <  1:9969/149‑1 (MQ=255)                           gAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCAcc                                                                                                     >  2:263453/1‑149 (MQ=255)                            aaCTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTaa                                                                                                              >  8:237745/1‑139 (MQ=255)                            aaCTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTaa                                                                                                              <  7:237745/139‑1 (MQ=255)                               tCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGt                                                                                                 >  2:64935/1‑149 (MQ=255)                                 gCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTg                                                                                                >  6:148800/1‑148 (MQ=255)                                  cAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGaa                                                                                              <  2:3742/149‑1 (MQ=255)                                     cGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGATTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGt                                                                                           <  4:280945/149‑1 (MQ=255)                                     cGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGt                                                                                           <  5:199924/149‑1 (MQ=255)                                             gtctACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGa                                                                                    >  6:39474/1‑148 (MQ=255)                                                  ccGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAgg                                                                              >  2:301387/1‑149 (MQ=255)                                                   cccaacgccggctgccaggtgcatctcgatgaactggacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCGGTACGGCCGTGGGTAAGGCTg                                                                                                         >  6:51346‑M1/96‑121 (MQ=255)                                                   cccaacgccggctgccaggtgcatctcgatgaactggacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCGGTACGGCCGTGGGTAAGGCTg                                                                                                         <  5:51346‑M1/26‑1 (MQ=255)                                                      aacgccggctgccaggtgcatctcgatgaactggacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCGGTACGGCGGTGGGTAAGGCTGCACcgcg                                                                                                  >  8:161305‑M1/93‑125 (MQ=255)                                                      aacgccggctgccaggtgcatctcgatgaactggacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCGGTACGGCCGTGGGTAAGGCTGCACcgcg                                                                                                  <  7:161305‑M1/33‑1 (MQ=255)                                                          gccatggcGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGtt                                                                      >  3:68559/1‑149 (MQ=255)                                                          gccatggcGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGtt                                                                      >  8:260469/1‑149 (MQ=255)                                                             atggcGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGc                                                                   >  6:7185/1‑149 (MQ=255)                                                                      gCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAg                                                          >  4:163969/1‑149 (MQ=255)                                                                       cAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGc                                                         <  5:7185/149‑1 (MQ=255)                                                                          ccGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGt                                                      <  5:148800/149‑1 (MQ=255)                                                                           cGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTc                                                     <  5:108785/149‑1 (MQ=255)                                                                                 tGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGCGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCgacgac                                               <  1:263453/149‑1 (MQ=255)                                                                                    cAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACgg                                             >  2:318397/1‑148 (MQ=255)                                                                                     agagTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGa                                           <  3:163969/149‑1 (MQ=255)                                                                                       gacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGt                                                                                                 <  1:263293‑M1/34‑1 (MQ=255)                                                                                       gacgctcccgtcgtcgacggctatcgccagcaaaccctgacctgtatctagcaaccttcACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGt                                                                                                 >  2:263293‑M1/60‑93 (MQ=255)                                                                                                   cgcCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATc                             <  4:68559/149‑1 (MQ=255)                                                                                                    gcCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCg                            <  7:260469/149‑1 (MQ=255)                                                                                                     ccTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATc                             >  6:304849/1‑147 (MQ=255)                                                                                                              gggTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTg                                                                 <  2:97162/102‑1 (MQ=255)                                                                                                              gggTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTg                                                                 >  1:97162/1‑102 (MQ=255)                                                                                                              gggTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCt                  <  1:301387/149‑1 (MQ=255)                                                                                                                gTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTgg                <  1:64935/149‑1 (MQ=255)                                                                                                                 tCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTc                                                     >  1:202215/1‑111 (MQ=255)                                                                                                                 tCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTc                                                     <  2:202215/111‑1 (MQ=255)                                                                                                                 tCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTgg                >  5:255403/1‑148 (MQ=255)                                                                                                                      ttgATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCg          >  6:70327/1‑149 (MQ=255)                                                                                                                      ttgATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCg          <  5:39474/149‑1 (MQ=255)                                                                                                                            tttttCATGGGTGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTg    <  8:12078/149‑1 (MQ=255)                                                                                                                            tttttCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGtt     <  4:241851/148‑1 (MQ=255)                                                                                                                               ttCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTggg  <  1:318397/148‑1 (MQ=255)                                                                                                                               ttCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTggg  <  5:70327/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                 TTGAGGTTTGCGCTGGTCAGCTGTTCGAACTCGCAGCGGGTCTGGTCTACCGGCATGGCCATGGCGTTTGCAGCCGGCCATGCCAGAGTGGCGAGCAGCGCCTGGAAAAGGGTCTTGTTGATGTTTTTCATGGGGGTCCTGAAAGACGCGGTACGGCCGTGGGTAAGGCTGCACCGCGTGAAGGTTGCTAGATACAGGTCAGGGTTTGCTGGCGATAGCCGTCGACGACGGGAGCGTCCAGTTCATCGAGATGCACCTGGCAGCCGGCGTTGGG  >  NC_002947/2129516‑2129789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.