New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2435284	26 (0.520)	4 (0.090)	4/238	NT	22.9%	intergenic (+131/‑173)	PP_2133/PP_2134	hypothetical protein/transposase
	?	NC_002947	= 5756889	3 (0.060)					intergenic (+566/‑122)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

CCTACGCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2435128‑2435284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaggagggGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAG  <  NC_002947/5756889‑5756742                                                                                                                                                                                                                                                                                                                   CCTACGCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGA                                                                                                                                                               <  3:283381/148‑1  CTACGCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAG                                                                                                                                                              >  6:91686/1‑148   TACGCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAG                                                                                                                                                              >  1:50283/1‑147      GCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGCAGGGAGGAG                                                                                                                                                           >  6:236301/1‑147      GCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAG                                                                                                                                                           >  3:128141/1‑147            GAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGA                                                                                                                                                               <  1:156917/137‑1            GAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGA                                                                                                                                                               >  2:156917/1‑137                            CGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGG                                                                                                                                                          >  1:584/1‑126                            CGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGG                                                                                                                                                          <  2:584/126‑1                                     TACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAG                                                                                                                                                        <  1:64979/119‑1                                     TACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAG                                                                                                                                                        >  2:64979/1‑119                                                             TCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGC                                                                                                  >  8:31233/1‑149                                                                             GCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGATGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTT                                                                                    <  7:31233/147‑1                                                                                                  GCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCC                                                                                             <  5:74616/117‑1                                                                                                  GCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCC                                                                                             >  6:74616/1‑117                                                                                                                                                       AGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTG                 <  5:298116/140‑1                                                                                                                                                       AGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTG                 >  6:298116/1‑140                                                                                                                                                          AGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAG     <  5:294647/149‑1                                                                                                                                                            GGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAG     >  8:164602/1‑147                                                                                                                                                            GGGTGATTTCTCCTACGGTCTGTACTGCCCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAG     >  1:183221/1‑147                                                                                                                                                             GGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATAGGCCAGCAG  >  5:105988/1‑149                                                                                                                                                                                                                                                                                                                   CCTACGCCCTCGAAACCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2435128‑2435284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaggagggGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAG  <  NC_002947/5756889‑5756742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.