New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2435284	26 (0.520)	4 (0.090)	4/238	NT	22.9%	intergenic (+131/‑173)	PP_2133/PP_2134	hypothetical protein/transposase
	?	NC_002947	= 5756889	3 (0.060)					intergenic (+566/‑122)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

CTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACA  >  NC_002947/5756742‑5756986                                                                                                                                                    |                                                                                                  ctgctgGCCTATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACc                                                                                                  >  5:105988‑M2/1‑148 (MQ=255)    ctgGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGGGCAGTACAGACCGTAGGAGAAATCACcc                                                                                                 >  1:183221‑M2/1‑145 (MQ=255)    ctgGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccct                                                                                               <  5:294647‑M2/149‑5 (MQ=255)    ctgGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACcc                                                                                                 >  8:164602‑M2/1‑145 (MQ=255)                cACCTGCCGTTCAGCGTTGCCTCCTCCAGCGTATTCGCGTGTAAACCCGGTTGTATGGTTGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCTGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCaa                                                                                    <  7:19359/148‑1 (MQ=14)                cACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccctcct                                                                                            <  5:298116‑M2/140‑8 (MQ=255)                cACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccctcct                                                                                            >  6:298116‑M2/1‑133 (MQ=255)                        gTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTATGACTGTTCGCGCTGTACAGACCGTAGCAGAAATACCCACTCCTCCTTTCAACACCaaaac                                                                           >  6:314461/1‑147 (MQ=11)                              cGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGAt                                                                     <  6:203443/149‑1 (MQ=34)                                    cgccACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGaa                                                               >  6:131172/1‑149 (MQ=34)                                                                                   aaGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccatcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaagcaggcaccgcggagtttggcaccggctctgc                  <  7:31233‑M2/147‑82 (MQ=255)                                                                                            ggaggGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaagcaggcaccgc                                       <  5:74616‑M2/117‑61 (MQ=255)                                                                                            ggaggGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaagcaggcaccgc                                       >  6:74616‑M2/1‑57 (MQ=255)                                                                                                 gCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaagcaggcaccgcggagtttggcaccggctctgccagtgttcgcagatga  >  8:31233‑M2/1‑52 (MQ=255)                                                                                                                                                    |                                                                                                  CTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACA  >  NC_002947/5756742‑5756986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.