| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2435284 | 26 (0.520) | 4 (0.090) | 4/238 | NT | 22.9% | intergenic (+131/‑173) | PP_2133/PP_2134 | hypothetical protein/transposase |
| ? | NC_002947 | = 5756889 | 3 (0.060) | intergenic (+566/‑122) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase | |||||
CCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACA > NC_002947/2435143‑2435432 | ccTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAAc > 2:16708/1‑149 (MQ=255) ggCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTc < 4:212843/147‑1 (MQ=255) gCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCt > 3:45056/1‑149 (MQ=255) gAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCt < 6:196027/148‑1 (MQ=255) gAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCt > 3:299035/1‑148 (MQ=255) aGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa < 1:16708/149‑1 (MQ=255) aGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa < 6:208657/149‑1 (MQ=255) aGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa < 4:128141/149‑1 (MQ=255) gcgcCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGAc > 3:80678/1‑149 (MQ=255) ccATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGGAAACCCGCGTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTcgc > 5:268229/1‑149 (MQ=255) gcgcGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAg > 3:140514/1‑146 (MQ=255) cgGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGaaa < 5:91686/149‑1 (MQ=255) ttCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCAc < 4:80678/149‑1 (MQ=255) tCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggc > 8:31233‑M1/1‑97 (MQ=255) tCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCAcc > 5:63912/1‑149 (MQ=255) aTCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCAcccc < 2:50283/149‑1 (MQ=255) gAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCAGACTGTTCGCGCAGTACAGAACGTAGGAGAAATCACCcctcctcc > 1:107320/1‑149 (MQ=255) acTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTc < 4:299035/149‑1 (MQ=255) tGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCaa > 1:207013/1‑149 (MQ=255) gCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGATGGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctccctt < 7:31233‑M1/147‑67 (MQ=255) gCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCaa < 2:207013/147‑1 (MQ=255) ggTGCCAAACTCGGTGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGATGAGGGCCATAACTCGCTTCTGACTGTTCGAGCAGTACAGACCGTATGAGAAATCACCCCTCCTCCTTTCAACACCCAAgc < 7:204828/148‑1 (MQ=14) ggTGCAAAACTACGCGGTGCATTCTTCCCGGGTAAACCCGCTTCTATGGTAGGACTTCAAGGGAGGAGGAGGGCAATAACTCGCTTCTGACAGTTAGCGCAGTACAGACCTTAGGAGAAATCACCCCTCCTCCTTTCAACACACAAgc > 8:204828/1‑148 (MQ=11) cTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAg > 4:254852/1‑148 (MQ=40) gcgGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcc < 5:74616‑M1/117‑58 (MQ=255) gcgGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcc > 6:74616‑M1/1‑60 (MQ=255) ccTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTcg < 4:313672/148‑1 (MQ=32) cTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTcgcg > 6:245292/1‑149 (MQ=32) cTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTcgc > 6:289158/1‑148 (MQ=32) tGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGCGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTcgc > 1:87538/1‑147 (MQ=14) aggaggGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaatacggtggtggcggcaacgctgaacggcaggtg > 6:298116‑M1/1‑7 (MQ=255) aggaggGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaatacggtggtggcggcaacgctgaacggcaggtg < 5:298116‑M1/140‑134 (MQ=255) aggGgtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaatacggtggtggcggcaacgctgaacggcaggtggagattggccag < 5:294647‑M1/149‑146 (MQ=255) gggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaatacggtggtggcggcaacgctgaacggcaggtggagattggccag > 8:164602‑M1/1‑2 (MQ=255) gggtgatttctcctacggtctgtactgcccgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaatacggtggtggcggcaacgctgaacggcaggtggagattggccag > 1:183221‑M1/1‑2 (MQ=255) ggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaagcgggtttacccgcgaatacggtggtggcggcaacgctgaacggcaggtggagataggccagcag > 5:105988‑M1/1‑1 (MQ=255) | CCTTGGCTTGAGCGCCGCCCATACGCGACCCCTGTAGGCGCGGATTCATCTGCGAACACTGGCAGAGCCGGTGCCAAACTCCGCGGTGCCTGCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACA > NC_002947/2435143‑2435432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |