New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2468545 =	44 (0.870)	3 (0.060)	3/244	NT	6.5%	coding (378/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein
	?	NC_002947	2468600 =	45 (0.940)					coding (323/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein

GCGTGCGCTGGCCGGCGCCGAACGCTTGCTGGCAGGCACTGATGGCGCTGGACAGCGAGCGCCTGGATGGCTGCGTATTGGTCAGCGGCGACCCGCGCCTGCTGCAGTCTGGCCTTAACGCCGGCTTGTGGACGGTAGGCCTGGCCGCCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2468699‑2468545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCA  >  NC_002947/2468600‑2468744                                                                                                                                                                                                                                                                                                                GCGTGCGCTGGCCGGCGCCGAACGCTTGCTGGCAGGCACTGATGGCGCTGGACAGCGAGCGCCTGGATGGCTGCGTATTGGTCAGCGGCGACCCGCGCCTGCTGCAGTCTGGCCTTAACGCCGGCTTGTGGAGGGTAGGCCTGGCCGCC                                                                                                                                                           <  5:164951/149‑1   GTGCGCTGGCCGGCTCCGAACGCTTGATGGCAGGCACTTATGGCGCTGGACAGCGAGCGCCTGGATGGCTGCGTATTGGTCAGCGGCGACCCGCGCCTGCTGCAGTCTGGCCTTAACGCCGTCTTGTGGACGGTAGGCCTGGCCGCCTG                                                                                                                                                         <  6:245879/149‑1     GCGCTGGCCGGCGCCGAACGCTTGCTGGCAGGCACTGATGGCGCTGGACAGCGAGCGCCTGGATGGCTGCGTATTGGTCAGCGGCGACCCGCGCCTGCTGCAGTCTGGCCTTAACGCCGGCTTGTGGACGGTAGGCCTGGCCGCCTG                                                                                                                                                         >  5:172829/1‑147                                                                                                  CCTGCTGCAGTCTGGCCTTAACGCCGGCTTGTGGACGGTAGGCCTGGCCGCCTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAA                                                                        <  3:125831/133‑1                                                                                                  CCTGCTGCAGTCTGGCCTTAACGCCGGCTTGTGGACGGTAGGCCTGGCCGCCTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAA                                                                        >  4:125831/1‑133                                                                                                         CAGTCTGGCCTTAACGCCGGCTTGTGGACGGTAGGCCTGGCCGCCTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCATGCCAGCAAGCGTTCGGCGCCGGCCCCCGCAC                                                 >  6:226609/1‑149                                                                                                                                                        CAGCAGGCGGGGGTCCGGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGAGCGCATGCCCTGGCAGCGAGTCGGGCAGCACATGGGC    <  1:272007/149‑1                                                                                                                                                        CAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCA  >  5:171580/1‑149                                                                                                                                                        CAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGC    >  5:64411/1‑147                                                                                                                                                         AGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGG                            <  5:157456/122‑1                                                                                                                                                         AGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGG                            >  6:157456/1‑122                                                                                                                                                           CAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCAT                                                                                        >  7:94285/1‑60                                                                                                                                                           CAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCAT                                                                                        <  8:94285/60‑1                                                                                                                                                                                                                                                                                                                GCGTGCGCTGGCCGGCGCCGAACGCTTGCTGGCAGGCACTGATGGCGCTGGACAGCGAGCGCCTGGATGGCTGCGTATTGGTCAGCGGCGACCCGCGCCTGCTGCAGTCTGGCCTTAACGCCGGCTTGTGGACGGTAGGCCTGGCCGCCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2468699‑2468545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCA  >  NC_002947/2468600‑2468744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.