New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2468545 =	44 (0.870)	3 (0.060)	3/244	NT	6.5%	coding (378/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein
	?	NC_002947	2468600 =	45 (0.940)					coding (323/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein

CCAGGCAGGTGTCCAGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGC  >  NC_002947/2468400‑2468689                                                                                                                                                  |                                                                                                                                                  tggcccatgtgctgcccgactggctgccagggcatgcggtcaatggcgtgcgctggccggcgccgaacgcttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctgctg                                                                                                                                                >  5:171580‑M1/146‑149 (MQ=255) gcccatgtgctgcccgactcgctgccagggcatgcgctcaatggcgtgcgctggccggcgccgaacgcttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggccggacccccgcctgctg                                                                                                                                                <  1:272007‑M1/4‑1 (MQ=255)  caggcaggTGTCCAGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTg                                                                                                                                                >  4:116558/1‑148 (MQ=255)   gcccatgtgctgcccgactggctgccagggcatgcggtcaatggcgtgcgctggccggcgccgaacgcttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctgctg                                                                                                                                                >  5:64411‑M1/144‑147 (MQ=255)     gcaggTGTCCAGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAgg                                                                                                                                            >  6:79360/1‑149 (MQ=255)             ccAGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAgg                                                                                                                                    >  5:137009/1‑149 (MQ=255)              cAGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAgg                                                                                                                                    <  2:182309/148‑1 (MQ=255)               aGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGcc                                                                                                                                  >  4:44397/1‑149 (MQ=255)                        aGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCca                                                                                                                         <  1:294989/149‑1 (MQ=255)                           ccagggcatgcggtcaatggcgtgcgctggccggcgccgaacgcttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctgct                                                                                                                                                 <  5:157456‑M1/3‑1 (MQ=255)                           ccagggcatgcggtcaatggcgtgcgctggccggcgccgaacgcttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctgct                                                                                                                                                 >  6:157456‑M1/120‑122 (MQ=255)                              tCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGcc                                                                                                                   <  5:122719/149‑1 (MQ=255)                                gaacACCAAGTCCACGCCCACGCTGAACAGCGCCAGCGACGCCATGCAGCGCGCCAGATCCTGCTCTACCGGGCACAACGCTTGCCATTCCGCAGATCTCCGCTCCCATAACGGGCAGCAACCCGCCACGCCTACCGAGCACAACCCgg                                                                                                                 >  7:210767/4‑149 (MQ=255)                                     ccGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTa                                                                                                            <  3:116558/149‑1 (MQ=255)                                      cGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTaa                                                                                                           <  5:194706/149‑1 (MQ=255)                                            aaCGCCCAGGCTGAACAGCGCCAGCGTCACCTTGCTGCGAGCCAGATCCTGATCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGAGGTCGCATAACGTGCTGCAGTCGGCCAGGCATACCGTCCACAAGCCGGCGTTAAT‑Gc                                                                                                       >  1:177933/2‑146 (MQ=255)                                             aCGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGa                                                                                                   >  3:243273/1‑149 (MQ=255)                                                gtgcgggggccggcgccgaacgcttgctggcatgcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTg                                                                                                >  6:226609‑M1/99‑149 (MQ=255)                                                 ccAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTgc                                                                                               <  5:79360/149‑1 (MQ=255)                                                  cAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTgca                                                                                              <  5:59462/149‑1 (MQ=255)                                                   aGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTgcag                                                                                             >  6:172574/1‑149 (MQ=255)                                                         aaCAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCgg                                                                                                                 <  3:279674/124‑1 (MQ=255)                                                         aaCAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCgg                                                                                                                 >  4:279674/1‑124 (MQ=255)                                                          aCAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGgcgc                                                                                      >  4:249299/1‑149 (MQ=255)                                                                   gCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTcgccg                                                                             >  4:36507/1‑149 (MQ=255)                                                                     gTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCt                                                                           <  2:8300/149‑1 (MQ=255)                                                                       ttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAgg                                                                                         <  3:125831‑M1/58‑1 (MQ=255)                                                                       ttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAgg                                                                                         >  4:125831‑M1/76‑133 (MQ=255)                                                                        gcattGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGTCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCTCCGCTGa                                                                         <  2:177933/145‑1 (MQ=255)                                                                        gCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGa                                                                         >  6:278978/1‑148 (MQ=255)                                                                                 cgcgcCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGc                                                                <  5:278978/148‑1 (MQ=255)                                                                                 cgcgcCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGc                                                                <  5:172574/148‑1 (MQ=255)                                                                                 cgcgcCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCa                                                               <  6:137009/149‑1 (MQ=255)                                                                                       atggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctg                                                                                                                                                   <  8:94285‑M1/1‑1 (MQ=255)                                                                                       atggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctg                                                                                                                                                   >  7:94285‑M1/60‑60 (MQ=255)                                                                                        gATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATcc                                                        <  4:303819/149‑1 (MQ=255)                                                                                             tGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGAcc                                                                       >  4:210134/1‑129 (MQ=255)                                                                                             tGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGAcc                                                                       <  3:210134/129‑1 (MQ=255)                                                                                               ctctTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGgcg                                                   <  4:243273/147‑1 (MQ=255)                                                                                                    gCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTcgc                                                                               >  4:307532/1‑114 (MQ=255)                                                                                                    gCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTcgc                                                                               <  3:307532/114‑1 (MQ=255)                                                                                                     cGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGt                                           >  1:167232/1‑149 (MQ=255)                                                                                                        gCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGcgctcg                                               <  4:180704/142‑1 (MQ=255)                                                                                                        gCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGcgctcg                                               >  3:180704/1‑142 (MQ=255)                                                                                                            aTGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAgcgc                                    >  6:172829/1‑149 (MQ=255)                                                                                                                      aTTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGtgcc                          <  3:44397/149‑1 (MQ=255)                                                                                                                           gcAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATTAGtgcct                         <  5:318358/145‑1 (MQ=255)                                                                                                                           gcAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATTAGtgcct                         >  6:318358/1‑145 (MQ=255)                                                                                                                           gcAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGtgcctgc                       >  5:174272/1‑147 (MQ=255)                                                                                                                                     ggTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGAc                                                                        >  2:292062/1‑88 (MQ=255)                                                                                                                                     ggTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGAc                                                                        <  1:292062/88‑1 (MQ=255)                                                                                                                                      gTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCg          <  3:249299/149‑1 (MQ=255)                                                                                                                                      gTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCg          <  3:36507/149‑1 (MQ=255)                                                                                                                                      gTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCCTTAAG‑GCCAGACTGCAGCACGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGAAGACCAGCGCCATCACTGCCTCCCAGCCACCCTTCg          >  2:272007/1‑149 (MQ=255)                                                                                                                                          cATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGgcgc      <  3:142537/149‑1 (MQ=255)                                                                                                                                             aaCGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAGCGCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGcc                                                            <  1:67507/93‑1 (MQ=255)                                                                                                                                             aaCGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGcc                                                            >  2:67507/1‑92 (MQ=255)                                                                                                                                              aCGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGc  >  3:13140/1‑149 (MQ=255)                                                                                                                                               cGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCACTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGc  >  1:51288/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCAGGCAGGTGTCCAGCGCTTCCAGATGGTCGATCACCGAGTGCACGCCCAGGCTGAACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTCGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGC  >  NC_002947/2468400‑2468689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.