| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2468545 = | 44 (0.870) | 3 (0.060) | 3/244 | NT | 6.5% | coding (378/564 nt) | PP_2162 | phosphonoacetaldehyde phosphonohydrolase‑like protein |
| ? | NC_002947 | 2468600 = | 45 (0.940) | coding (323/564 nt) | PP_2162 | phosphonoacetaldehyde phosphonohydrolase‑like protein | |||||
ACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCA > NC_002947/2468457‑2468744 | aCAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGgcgc > 4:249299/1‑149 (MQ=255) gCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTc‑‑gccg > 4:36507/1‑149 (MQ=255) gTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCt < 2:8300/149‑1 (MQ=255) ttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAgg < 3:125831‑M1/58‑1 (MQ=255) ttgctggcaggcactgatggcgctggacagcgagcgcctggatggctgcgtattggtcagcggcgacccgcgcctGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAgg > 4:125831‑M1/76‑133 (MQ=255) gcattGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGTCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑TCCGCTGa < 2:177933/145‑1 (MQ=255) gCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGa > 6:278978/1‑148 (MQ=255) cgcgcCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGc < 5:172574/148‑1 (MQ=255) cgcgcCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGc < 5:278978/148‑1 (MQ=255) cgcgcCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCa < 6:137009/149‑1 (MQ=255) gATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATcc < 4:303819/149‑1 (MQ=255) tGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGAcc > 4:210134/1‑129 (MQ=255) tGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGAcc < 3:210134/129‑1 (MQ=255) ctctTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGgcg < 4:243273/147‑1 (MQ=255) gCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTc‑‑gc > 4:307532/1‑114 (MQ=255) gCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTc‑‑gc < 3:307532/114‑1 (MQ=255) cGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGt > 1:167232/1‑149 (MQ=255) gCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGcgctcg < 4:180704/142‑1 (MQ=255) gCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGcgctcg > 3:180704/1‑142 (MQ=255) aTGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAgcgc > 6:172829/1‑149 (MQ=255) aTTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGtgcc < 3:44397/149‑1 (MQ=255) gcAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATTAGtgcct < 5:318358/145‑1 (MQ=255) gcAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATTAGtgcct > 6:318358/1‑145 (MQ=255) gcAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGtgcctgc > 5:174272/1‑147 (MQ=255) ggTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGAc < 1:292062/88‑1 (MQ=255) ggTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGAc > 2:292062/1‑88 (MQ=255) gTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCg < 3:249299/149‑1 (MQ=255) gTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCg < 3:36507/149‑1 (MQ=255) gTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCCTTAAG‑GCCAGACTGCAGCACGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGAAGACCAGCGCCATCACTGCCTCCCAGCCACCCTTCg > 2:272007/1‑149 (MQ=255) cATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGgcgc < 3:142537/149‑1 (MQ=255) aaCGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAGCGCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGcc < 1:67507/93‑1 (MQ=255) aaCGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGcc > 2:67507/1‑92 (MQ=255) aCGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGc > 3:13140/1‑149 (MQ=255) cGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCACTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGc > 1:51288/1‑148 (MQ=255) cctgctgcagtctggccttaacgccggcttgtggacggtaggcctggccgcctgcagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCaa < 3:125831‑M2/75‑1 (MQ=255) cctgctgcagtctggccttaacgccggcttgtggacggtaggcctggccgcctgcagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCaa > 4:125831‑M2/59‑133 (MQ=255) CAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAgcgc > 5:172829‑M1/1‑147 (MQ=255) CAGGCGGCCAGGCCTACCGTCCACAAGACGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATAAGTGCCTGCCATCAAGCGTTCGGAGCCGGCCAGCGCAc < 6:245879‑M1/149‑1 (MQ=255) cagtctggccttaacgccggcttgtggacggtaggcctggccgcctgcagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCATGCCAGCAAGCGTTCGGCGCCGGCCCCCGCAc > 6:226609‑M2/52‑149 (MQ=255) GGCGGCCAGGCCTACCCTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGc < 5:164951‑M1/149‑1 (MQ=255) cggcCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCa < 2:167232/149‑1 (MQ=255) ccAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCAtt > 4:297698/1‑148 (MQ=255) aGGCCTTCCGTCGAGTAGCCGGCGTTAAG‑GCCAGTCTGGAGCATGCGCGGGTC‑‑GCCGGTGACCAATAGGCAGCCATCCAGGCGCTCGCTGTCCATCGCCATGTGTGCCTGCCAGCAAGCGTTCGGCGGGGGGCAGCGCACGCCATTGAc < 8:210767/149‑1 (MQ=255) ccTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCg > 1:49940/1‑148 (MQ=255) cTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCga > 2:297532/1‑147 (MQ=255) gcaAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTgg > 5:247901/2‑148 (MQ=255) acaAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGc > 5:31684/1‑119 (MQ=255) acaAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGc < 6:31684/119‑1 (MQ=255) aGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGc < 6:247901/149‑1 (MQ=255) cGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGtgcct > 1:252269/1‑90 (MQ=255) cGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGtgcct < 2:252269/90‑1 (MQ=255) cGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCAc < 2:292593/121‑1 (MQ=255) aG‑GCCAGACTGCAGCAGGCGCCGTTC‑‑GCCGCTGACCAATACGCAGCCATCCAGCCGCTCGCTGTCCAGCGCCATCAGAGCCTGCCAGCAAGCCATCGGCGCCGGCCAGCGCACGCCATTGACCGCAAGCCCTGGCAGCCAGTCGGgcag < 5:245879/149‑1 (MQ=255) cagcAGGCGGGGGTCCGGCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGAGCGCATGCCCTGGCAGCGAGTCGGGCAGCACATGGGc < 1:272007‑M2/145‑1 (MQ=255) cagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGc > 5:64411‑M2/5‑147 (MQ=255) cagcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCa > 5:171580‑M2/5‑149 (MQ=255) agcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTgg > 6:157456‑M2/4‑122 (MQ=255) agcAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTgg < 5:157456‑M2/119‑1 (MQ=255) cAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCAt > 7:94285‑M2/2‑60 (MQ=255) cAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCAt < 8:94285‑M2/59‑1 (MQ=255) | ACAGCGCCAGCGTCGCCTTGCTGCGCGCCAGATCCTGCTCTTGCGGGCTCATGGCTTGCCATTGCGCAGAAGTGCGGTCGCATAACGGGCTGCAGGCGGCCAGGCCTACCGTCCACAAGCCGGCGTTAAG‑GCCAGACTGCAGCAGGCGCGGGTC‑‑GCCGCTGACCAATACGCAGCCATCCAGGCGCTCGCTGTCCAGCGCCATCAGTGCCTGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCA > NC_002947/2468457‑2468744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |