| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2690807 = | 39 (0.770) | 3 (0.060) | 3/246 | NT | 7.5% | coding (147/594 nt) | PP_2357 | type I pili subunit CsuB |
| ? | NC_002947 | 2690853 = | 37 (0.770) | coding (193/594 nt) | PP_2357 | type I pili subunit CsuB | |||||
GGCGCGCCAGGGCCATCCAGGCGCGCCGTCGCCCCTAGGTCGATACGTCCCAGGGCCTGAGCTCCCGCATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2690923‑2690807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGTGCGCGT > NC_002947/2690853‑2690998 GGCGCGCCAGGGCCATCCAGGCGCGCCGTCGCCCCTAGGTCGATACGTCCCAGGGCCTGAGCTCCCGCATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCG > 5:20988/1‑116GGCGCGCCAGGGCCATCCAGGCGCGCCGTCGCCCCTAGGTCGATACGTCCCAGGGCCTGAGCTCCCGCATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCG > 5:25541/1‑116GGCGCGCCAGGGCCATCCAGGCGCGCCGTCGCCCCTAGGTCGATACGTCCCAGGGCCTGAGCTCCCGCATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCG < 6:20988/116‑1GGCGCGCCAGGGCCATCCAGGCGCGCCGTCGCCCCTAGGTCGATACGTCCCAGGGCCTGAGCTCCCGCATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCG < 6:25541/116‑1 ATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACACGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTC > 1:138165/1‑149 TCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCC > 5:289178/1‑149 TTGACCAGCATGCAGCCACGCTGCACCAGTACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGA < 6:289178/149‑1 ACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGGGCCACCCGGATACGCCCTATCAGtggct > 6:272261/1‑144 CGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGTGCGCGT > 5:238597/1‑149 GGCGCGCCAGGGCCATCCAGGCGCGCCGTCGCCCCTAGGTCGATACGTCCCAGGGCCTGAGCTCCCGCATCGCGGGTCTGGTTGACCAGCATGCAGCCACGCTGCACCAGTACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2690923‑2690807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGTGCGCGT > NC_002947/2690853‑2690998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |