New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2690807 =	39 (0.770)	3 (0.060)	3/246	NT	7.5%	coding (147/594 nt)	PP_2357	type I pili subunit CsuB
	?	NC_002947	2690853 =	37 (0.770)					coding (193/594 nt)	PP_2357	type I pili subunit CsuB

ATGCCACATCGGCTGCGCCGCCTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCG  >  NC_002947/2690661‑2690950                                                                                                                                                   |                                                                                                                                                acgcgcacctgatagggcgtatccgggttgcactccaggcgcggcggacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcgcg                                                                                                                                               >  5:238597‑M1/147‑149 (MQ=255) aTGCCACATCGGCTGCGCCGCCTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCg                                                                                                                                               >  2:53779/1‑149 (MQ=255)    ccACATCGGCTGCGCCGCCTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCggg                                                                                                                                             >  5:248774/1‑148 (MQ=255)    agccactgatagggcgtatccgggtggccctccaggcgcggcggacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcGCGGGt                                                                                                                                            >  6:272261‑M1/144‑149 (MQ=255)         tCGGCTGCGCCGCCTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTgg                                                                                                                                       <  7:126000/149‑1 (MQ=255)           ggCTGCGCCGCCTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTg                                                                                                                                     <  2:231652/149‑1 (MQ=255)                    gccTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGc                                                                                                                            <  7:173683/149‑1 (MQ=255)                             cTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTg                                                                                                                   >  7:76376/1‑149 (MQ=255)                             cTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTg                                                                                                                   <  2:114959/149‑1 (MQ=255)                                  tccaggcgcggcggacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCaa                                                                                                              <  6:289178‑M1/36‑1 (MQ=255)                                     aGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAAc                                                                                                             <  1:53779/147‑1 (MQ=255)                                            gACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATg                                                                                                                      >  4:166226/1‑131 (MQ=255)                                            gACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATg                                                                                                                      <  3:166226/131‑1 (MQ=255)                                            gACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCcgc                                                                                                    >  7:240208/1‑149 (MQ=255)                                              ggacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGa                                                                                                  >  5:289178‑M1/102‑149 (MQ=255)                                               gacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcGCGTGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGAt                                                                                                 >  1:138165‑M1/101‑149 (MQ=255)                                                   cGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCCTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCg                                                                                              <  1:103206/148‑1 (MQ=255)                                                    gATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCgg                                                                                             <  4:307735/148‑1 (MQ=255)                                                       aaGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCa                                                                                                                                   >  7:148282/1‑107 (MQ=255)                                                       aaGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCa                                                                                                                                   <  8:148282/107‑1 (MQ=255)                                                          gATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCt                                                                                        >  8:131552/1‑147 (MQ=255)                                                               cAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGccc                                                                                 >  1:40159/1‑149 (MQ=255)                                                                aaGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGACTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCCACGCTGCaccagt                                                                                                                   <  1:18445/114‑6 (MQ=255)                                                                aaGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGACTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCCACGCTGCaccagt                                                                                                                   >  2:18445/1‑109 (MQ=255)                                                                 aGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCCGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTg                                                                               >  7:92017/1‑149 (MQ=255)                                                                 aGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTg                                                                               <  8:76376/149‑1 (MQ=255)                                                                  ggTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTgg                                                                              <  8:39377/149‑1 (MQ=255)                                                                        gtaGCGCATGCTGGCCGCGCTGTTCGGCCTGGTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGTTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTa                                                                        <  3:26476/147‑1 (MQ=255)                                                                         gAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTAt                                                                       >  2:303219/1‑149 (MQ=255)                                                                         gAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTAt                                                                       <  8:240208/149‑1 (MQ=255)                                                                           gcgcATGCTGGCCGCGCTGTTCGGCCTGTTGGTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCg                                                                     >  1:33681/1‑149 (MQ=255)                                                                                    ggCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAgggg                                                            >  6:240719/1‑149 (MQ=255)                                                                                     gCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCTGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAggg                                                             <  6:248774/147‑1 (MQ=255)                                                                                       cgcgCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGa                                                                    <  6:11724/138‑1 (MQ=255)                                                                                       cgcgCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGa                                                                    >  5:11724/1‑138 (MQ=255)                                                                                                     tgttgtTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGAt                                           >  4:205443/1‑149 (MQ=255)                                                                                                                   aGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCTGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGcc                             <  8:92017/149‑1 (MQ=255)                                                                                                                        cGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGc                                        >  4:1123/1‑133 (MQ=255)                                                                                                                        cGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGc                                        <  3:1123/133‑1 (MQ=255)                                                                                                                             cggcggATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAgtggt                   <  1:303219/149‑1 (MQ=255)                                                                                                                                        ctcGTGGAAGTGCGGGAACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAg        >  2:285785/1‑149 (MQ=255)                                                                                                                                         tcGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATgg                                         <  4:246719/115‑1 (MQ=255)                                                                                                                                         tcGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATgg                                         >  3:246719/1‑115 (MQ=255)                                                                                                                                         tcGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGc       >  2:73873/1‑149 (MQ=255)                                                                                                                                           gTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGc       <  7:131552/147‑1 (MQ=255)                                                                                                                                           gTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGc       <  2:33681/147‑1 (MQ=255)                                                                                                                                              gAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCg  <  5:240719/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                ATGCCACATCGGCTGCGCCGCCTCACTGCTACGCTCAGTTCAGGACGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCG  >  NC_002947/2690661‑2690950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.