New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2690807 =	39 (0.770)	3 (0.060)	3/246	NT	7.5%	coding (147/594 nt)	PP_2357	type I pili subunit CsuB
	?	NC_002947	2690853 =	37 (0.770)					coding (193/594 nt)	PP_2357	type I pili subunit CsuB

CGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGTGCGCGT  >  NC_002947/2690706‑2690998                                                                                                                                                    |                                                                                                                                                  ggacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGa                                                                                                                                                  >  5:289178‑M1/102‑149 (MQ=255)  gacgctggctcaacagcacaccactcaagggcgcgccagggccatccaggcgcgccgtcgcccctaggtcgatacgtcccagggcctgagctcccgcatcGCGTGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGAt                                                                                                                                                 >  1:138165‑M1/101‑149 (MQ=255)      cGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCCTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCg                                                                                                                                              <  1:103206/148‑1 (MQ=255)       gATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCgg                                                                                                                                             <  4:307735/148‑1 (MQ=255)             gATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCt                                                                                                                                        >  8:131552/1‑147 (MQ=255)                  cAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGccc                                                                                                                                 >  1:40159/1‑149 (MQ=255)                    aGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCCGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTg                                                                                                                               >  7:92017/1‑149 (MQ=255)                    aGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTg                                                                                                                               <  8:76376/149‑1 (MQ=255)                     ggTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTgg                                                                                                                              <  8:39377/149‑1 (MQ=255)                           gtaGCGCATGCTGGCCGCGCTGTTCGGCCTGGTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGTTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTa                                                                                                                        <  3:26476/147‑1 (MQ=255)                            gAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTAt                                                                                                                       <  8:240208/149‑1 (MQ=255)                            gAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTAt                                                                                                                       >  2:303219/1‑149 (MQ=255)                              gcgcATGCTGGCCGCGCTGTTCGGCCTGTTGGTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCg                                                                                                                     >  1:33681/1‑149 (MQ=255)                                       ggCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAgggg                                                                                                            >  6:240719/1‑149 (MQ=255)                                        gCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCTGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAggg                                                                                                             <  6:248774/147‑1 (MQ=255)                                          cgcgCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGa                                                                                                                    >  5:11724/1‑138 (MQ=255)                                          cgcgCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGa                                                                                                                    <  6:11724/138‑1 (MQ=255)                                                        tgttgtTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGAt                                                                                           >  4:205443/1‑149 (MQ=255)                                                                      aGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCTGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGcc                                                                             <  8:92017/149‑1 (MQ=255)                                                                           cGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGc                                                                                        <  3:1123/133‑1 (MQ=255)                                                                           cGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGc                                                                                        >  4:1123/1‑133 (MQ=255)                                                                                cggcggATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAgtggt                                                                   <  1:303219/149‑1 (MQ=255)                                                                                           ctcGTGGAAGTGCGGGAACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAg                                                        >  2:285785/1‑149 (MQ=255)                                                                                            tcGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATgg                                                                                         <  4:246719/115‑1 (MQ=255)                                                                                            tcGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATgg                                                                                         >  3:246719/1‑115 (MQ=255)                                                                                            tcGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGc                                                       >  2:73873/1‑149 (MQ=255)                                                                                              gTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGc                                                       <  7:131552/147‑1 (MQ=255)                                                                                              gTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGc                                                       <  2:33681/147‑1 (MQ=255)                                                                                                 gAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCg                                                  <  5:240719/149‑1 (MQ=255)                                                                                                   atcgcgggtctggttgaccagcatgcagccacgctgcaccagtacacgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTc                                                >  1:138165‑M2/50‑149 (MQ=255)                                                                                                    tcgcgggtctggttgaccagcatgcagccacgctgcaccagtacccgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTcc                                               >  5:289178‑M2/49‑149 (MQ=255)                                                                                                       CGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGcc                                                                             >  5:20988‑M1/1‑116 (MQ=255)                                                                                                       CGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGcc                                                                             >  5:25541‑M1/1‑116 (MQ=255)                                                                                                       CGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGcc                                                                             <  6:25541‑M1/116‑1 (MQ=255)                                                                                                       CGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGcc                                                                             <  6:20988‑M1/116‑1 (MQ=255)                                                                                                            aCTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATg                                                                                          >  4:55506/1‑98 (MQ=255)                                                                                                                ttgaccagcatgcagccacgctgcaccagtacccgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGa                                   <  6:289178‑M2/113‑1 (MQ=255)                                                                                                                gTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGa                                   <  3:205443/149‑1 (MQ=255)                                                                                                                    agccacgCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTg                                >  1:278641/7‑148 (MQ=255)                                                                                                                        tGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCACGCCTGGAGTGCAAcc                           >  5:93772/1‑149 (MQ=255)                                                                                                                         ggCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAgt                                                                      <  3:114719/105‑1 (MQ=255)                                                                                                                         ggCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATAGACCTAGGGGCGACCGCGCGCCTGGATGGCCCTGGCGCCCCCTTGAgt                                                                      >  4:114719/1‑105 (MQ=255)                                                                                                                          gCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCTAGCGTCCGCCGCGCCTGGAGTGCAACCCg                         <  1:285785/149‑1 (MQ=255)                                                                                                                          gCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCg                         >  2:103607/1‑149 (MQ=255)                                                                                                                                     gTCAACCAGACCCGCGATTCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTa              >  4:55416/1‑149 (MQ=255)                                                                                                                                        aaCCAGACCCGCGATGCGGGAGCTCAGGCCCTGGTACGTATCGACCTAGCTGCGACGGCGCTCCAGGATGCCCCAGGCGAGCCCTTGAATCTTTTGCTGTTTAGCCAGCGTCAGCCGCGCCAGGTCTGCAAACCGGATACACCCTAt             >  2:190236/1‑147 (MQ=255)                                                                                                                                         aCCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCCGATACCCCCTATCAg          >  2:151177/1‑149 (MQ=255)                                                                                                                                           cAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAgg         >  1:116311/1‑148 (MQ=255)                                                                                                                                           cAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGt        <  2:40159/149‑1 (MQ=255)                                                                                                                                              acccgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGGGCCACCCGGATACGCCCtatcagtggct     >  6:272261‑M2/7‑144 (MQ=255)                                                                                                                                                 cgcGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGTGCGCGt  >  5:238597‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CGTTTCGATAAGGATAACAAGGTGACGGAGCGCATGCTGGCCGCGCTGTTCGGCCTGTTGTTCAGCGGCAGTACCGTGGCGGCGGATTTTCTCGTGGAAGTGCGGGTACTGGTGCAGCGTGGCTGCATGCTGGTCAACCAGACCCGCGATGCGGGAGCTCAGGCCCTGGGACGTATCGACCTAGGGGCGACGGCGCGCCTGGATGGCCCTGGCGCGCCCTTGAGTGGTGTGCTGTTGAGCCAGCGTCCGCCGCGCCTGGAGTGCAACCCGGATACGCCCTATCAGGTGCGCGT  >  NC_002947/2690706‑2690998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.