New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2785510	44 (0.870)	3 (0.060)	3/240	NT	7.1%	coding (304/390 nt)	PP_5523	hypothetical protein
	?	NC_002947	= 2785556	38 (0.810)					coding (350/390 nt)	PP_5523	hypothetical protein

CCCTATCTTGAGCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2785354‑2785510 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaaagtGAGGCAATCAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTCAACTTTGGGGGGAAATTGTCAAGCTCCGCTTCGTTCAACCAACCGAGGCGTAAATGTAACCTTGGGAATGTGACCAAAGCGCTTACTGTACTCATCAGTAG  <  NC_002947/2785556‑2785411                                                                                                                                                                                                                                                                                                                 CCCTATCTTGAGCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCC                                                                                                                                                            >  6:29821/1‑149   CTATCTTGAGCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCC                                                                                                                                                          >  4:191987/1‑149                                                                ATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTGAGGCAATCAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTCAACTTTGG                                                                                               <  5:29821/147‑1                                                                          TAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTACCCCCAAAGTGAGGCAATAAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTAAACTTTTGGGGGAAATTtt                                                                                    >  6:328089/1‑146                                                                                     GTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTGAGGCAATCAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTCAACTTTGGGGGGAAATTGTCAAGCTCCGCT                                                                         <  5:328089/148‑1                                                                                                                                                       CCAAAGTGAGGCAATCAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTCAACTTTGGGGGGAAATTGTCAAGCTCCGCTTCGTTCAACCAACCGAGGCGTAAATGTAACCTTGGGAATGTGACCAAAGCGCTTACTGTACTCATCA      >  6:209618/1‑149                                                                                                                                                           AGTGAGGCAATCAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTCAACTTTGGGGGGAAATTGTCAAGCTCCGCTTCGTTCAACCAACCGAGGCGTAAATGTAACCTTGGGAATGTGACCAAAGCGCTTACTGTACTCATCAGTAG  <  3:186203/149‑1                                                                                                                                                                                                                                                                                                                 CCCTATCTTGAGCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2785354‑2785510 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaaagtGAGGCAATCAAGATCAGCCAAAGGGCTGCTCCCATATCTCGCCTCAACTTTGGGGGGAAATTGTCAAGCTCCGCTTCGTTCAACCAACCGAGGCGTAAATGTAACCTTGGGAATGTGACCAAAGCGCTTACTGTACTCATCAGTAG  <  NC_002947/2785556‑2785411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.