| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2785510 | 44 (0.870) | 3 (0.060) | 3/240 | NT | 7.1% | coding (304/390 nt) | PP_5523 | hypothetical protein |
| ? | NC_002947 | = 2785556 | 38 (0.810) | coding (350/390 nt) | PP_5523 | hypothetical protein | |||||
CTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCTGCC > NC_002947/2785411‑2785701 | cTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCact < 3:186203‑M2/149‑4 (MQ=255) tgatgaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCactttgg > 6:209618‑M2/1‑142 (MQ=255) gaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAg > 2:83058/1‑149 (MQ=255) tACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCACCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGTCT‑GATCTTGATTGCCTCACTTTGGGGAGCgg > 8:302053/1‑149 (MQ=255) gTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttgg > 7:82162/1‑149 (MQ=255) tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttggt < 4:186203/149‑1 (MQ=255) tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttggt < 1:83058/149‑1 (MQ=255) cTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtc < 3:138504/149‑1 (MQ=255) cTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTT‑GGGAGCGGTTGGTTACTtc > 3:306842/1‑148 (MQ=255) attaggTCACATACCCAAGGTTACATTTACGCCTCGGATGGTTGAACGAAGCGGAGCTTGACAATTACCCCCCAAACTTCAGGCGAGATATGGGAGCAGCCCTTTCCCT‑GATCTTGATTGCCTCACTTAGGGGAGCGGATGGATACtt > 4:50348/5‑148 (MQ=255) ttGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttgg < 7:100163/140‑1 (MQ=255) ttGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttgg > 8:100163/1‑140 (MQ=255) gTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTT‑GGGAGCGGTTGGTTACTtcatcatc < 4:306842/149‑1 (MQ=255) cccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt > 2:195642/1‑149 (MQ=255) ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt > 3:108749/1‑148 (MQ=255) ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt > 3:13270/1‑148 (MQ=255) cATTTACGCCACGTTTTGTTGAACTAATCGGAGCTTTACAATTTCCCCCCAAAGTTTAGGCGATATATGGGATCAGCCCTTTGGCT‑GATCTTTATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAAc < 7:302053/148‑1 (MQ=255) ccTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtcatcatc > 1:43172/1‑124 (MQ=255) ccTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtcatcatc < 2:43172/124‑1 (MQ=255) ttggttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCATGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACtg > 6:214246/1‑149 (MQ=255) ggttgAACGAAGCGGAGCTTGACAATTTCCCCCCAATGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTGACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACtgt < 3:50348/148‑1 (MQ=255) gttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTgg < 4:13270/149‑1 (MQ=255) ttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGa > 3:251692/1‑135 (MQ=255) ttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGa < 4:251692/135‑1 (MQ=255) cGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGa < 7:249334/118‑1 (MQ=255) cGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGa > 8:249334/1‑118 (MQ=255) gAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACtt > 4:3089/1‑101 (MQ=255) gAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACtt < 3:3089/101‑1 (MQ=255) aGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgac < 5:328089‑M2/148‑74 (MQ=255) aGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCAttctt < 4:108749/149‑1 (MQ=255) cTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGt > 1:14498/1‑149 (MQ=255) gACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTcc > 1:242132/1‑149 (MQ=255) gACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTccc > 5:44196/1‑149 (MQ=255) aaaattTCCCCCAAAAGTTTAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTTATTGCCTCactttgggggtaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgctta > 6:328089‑M2/3‑64 (MQ=255) tttCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCgttgt < 2:14498/149‑1 (MQ=255) cccccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGtttt < 6:44196/148‑1 (MQ=255) ccccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCt > 7:285637/1‑149 (MQ=255) ccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcat < 5:29821‑M2/147‑95 (MQ=255) aaaGTTGAGGCGATATATCGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATc < 3:191987/149‑1 (MQ=255) aGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCTTTCTTCTTTTGTCCCGTTGTTTTCTTATCGt < 1:195642/149‑1 (MQ=255) gTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGtt < 8:285637/149‑1 (MQ=255) gCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTc > 6:263482/1‑110 (MQ=255) gCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTc < 5:263482/110‑1 (MQ=255) cTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTgtcg < 2:242132/149‑1 (MQ=255) tGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCCTTTTCTATCGTCTTGTCGTCTTTATTCAACg > 7:84989/1‑149 (MQ=255) ccTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCTGcc > 4:151870/1‑149 (MQ=255) cACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAgct < 4:120564/106‑1 (MQ=255) cACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAgct > 3:120564/1‑106 (MQ=255) | CTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCTGCC > NC_002947/2785411‑2785701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |