New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2785510	44 (0.870)	3 (0.060)	3/240	NT	7.1%	coding (304/390 nt)	PP_5523	hypothetical protein
	?	NC_002947	= 2785556	38 (0.810)					coding (350/390 nt)	PP_5523	hypothetical protein

GCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTT  >  NC_002947/2785365‑2785657                                                                                                                                                  |                                                                                                                                                     gCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGtt                                                                                                                                                     >  8:148665/1‑147 (MQ=255)   aGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAgg                                                                                                                                                 <  3:316245/149‑1 (MQ=255)         aaCCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGat                                                                                                                                           <  7:67663/149‑1 (MQ=255)                   gggCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGagcag                                                                                                                                 <  7:148665/149‑1 (MQ=255)                    ggCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGagcagc                                                                                                                                <  2:100450/149‑1 (MQ=255)                        gACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCtt                                                                                                                            >  4:308833/1‑149 (MQ=255)                        gACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCtt                                                                                                                            <  3:44270/149‑1 (MQ=255)                                   aGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCtt                                                                                                                <  3:308833/149‑1 (MQ=255)                                      cATCGATGCCTACTGATGAGTACAGTAAGCGCTTGGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGAt                                                                                                             <  6:311958/149‑1 (MQ=255)                                               cTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCact                                                                                                    <  3:186203‑M2/149‑4 (MQ=255)                                                   tgatgaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCactttgg                                                                                                >  6:209618‑M2/1‑142 (MQ=255)                                                     atgaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTgaggcaatcaagatcagccaaagggctgctcccatatctcgcctcaactttgg                                                                                                 <  5:29821‑M1/147‑54 (MQ=255)                                                       gaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAg                                                                                            >  2:83058/1‑149 (MQ=255)                                                          tACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCACCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGTCT‑GATCTTGATTGCCTCACTTTGGGGAGCgg                                                                                         >  8:302053/1‑149 (MQ=255)                                                              gTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttgg                                                                                     >  7:82162/1‑149 (MQ=255)                                                               tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTgg                                                                                                                         <  2:305162/113‑1 (MQ=255)                                                               tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTgg                                                                                                                         >  1:305162/1‑113 (MQ=255)                                                               tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttggt                                                                                    <  4:186203/149‑1 (MQ=255)                                                               tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttggt                                                                                    <  1:83058/149‑1 (MQ=255)                                                               tAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTACCCCCAAAGTgaggcaataaagatcagccaaagggctgctcccatatctcgcctaaacttttgggggaaatttt                                                                                      >  6:328089‑M1/1‑84 (MQ=255)                                                                     cTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtc                                                                              <  3:138504/149‑1 (MQ=255)                                                                     cTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTT‑GGGAGCGGTTGGTTACTtc                                                                              >  3:306842/1‑148 (MQ=255)                                                                     attaggTCACATACCCAAGGTTACATTTACGCCTCGGATGGTTGAACGAAGCGGAGCTTGACAATTACCCCCCAAACTTCAGGCGAGATATGGGAGCAGCCCTTTCCCT‑GATCTTGATTGCCTCACTTAGGGGAGCGGATGGATACtt                                                                               >  4:50348/5‑148 (MQ=255)                                                                       ttGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttgg                                                                                     <  7:100163/140‑1 (MQ=255)                                                                       ttGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCggttgg                                                                                     >  8:100163/1‑140 (MQ=255)                                                                          gTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTgaggcaatcaagatcagccaaagggctgctcccatatctcgcctcaactttggggggaaattgtcaagctccgct                                                                           <  5:328089‑M1/148‑76 (MQ=255)                                                                          gTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATgg                                                                                                                                       >  4:293877/1‑88 (MQ=255)                                                                          gTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATgg                                                                                                                                       <  3:293877/88‑1 (MQ=255)                                                                          gTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTT‑GGGAGCGGTTGGTTACTtcatcatc                                                                        <  4:306842/149‑1 (MQ=255)                                                                                  cccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt                                                                 >  2:195642/1‑149 (MQ=255)                                                                                   ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAgg                                                                                                                                                 >  7:148040/1‑69 (MQ=255)                                                                                   ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAgg                                                                                                                                                 <  8:148040/69‑1 (MQ=255)                                                                                   ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt                                                                 >  3:108749/1‑148 (MQ=255)                                                                                   ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt                                                                 >  3:13270/1‑148 (MQ=255)                                                                                            cATTTACGCCACGTTTTGTTGAACTAATCGGAGCTTTACAATTTCCCCCCAAAGTTTAGGCGATATATGGGATCAGCCCTTTGGCT‑GATCTTTATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAAc                                                        <  7:302053/148‑1 (MQ=255)                                                                                                    ccTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtcatcatc                                                                        <  2:43172/124‑1 (MQ=255)                                                                                                    ccTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtcatcatc                                                                        >  1:43172/1‑124 (MQ=255)                                                                                                          ttggttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCATGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACtg                                         >  6:214246/1‑149 (MQ=255)                                                                                                            ggttgAACGAAGCGGAGCTTGACAATTTCCCCCCAATGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTGACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACtgt                                        <  3:50348/148‑1 (MQ=255)                                                                                                             gttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTgg                                      <  4:13270/149‑1 (MQ=255)                                                                                                              ttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGa                                                   >  3:251692/1‑135 (MQ=255)                                                                                                              ttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGa                                                   <  4:251692/135‑1 (MQ=255)                                                                                                                   cGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGa                                                               <  7:249334/118‑1 (MQ=255)                                                                                                                   cGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGa                                                               >  8:249334/1‑118 (MQ=255)                                                                                                                    gAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACtt                                                                               <  3:3089/101‑1 (MQ=255)                                                                                                                    gAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACtt                                                                               >  4:3089/1‑101 (MQ=255)                                                                                                                      aGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgac                              <  5:328089‑M2/148‑74 (MQ=255)                                                                                                                      aGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCAttctt                             <  4:108749/149‑1 (MQ=255)                                                                                                                             cTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGt                      >  1:14498/1‑149 (MQ=255)                                                                                                                                gACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTcc                    >  1:242132/1‑149 (MQ=255)                                                                                                                                gACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTccc                   >  5:44196/1‑149 (MQ=255)                                                                                                                                 aaaattTCCCCCAAAAGTTTAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTTATTGCCTCactttgggggtaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgctta                   >  6:328089‑M2/3‑64 (MQ=255)                                                                                                                                     tttCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCgttgt              <  2:14498/149‑1 (MQ=255)                                                                                                                                         cccccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGtttt           <  6:44196/148‑1 (MQ=255)                                                                                                                                          ccccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCt         >  7:285637/1‑149 (MQ=255)                                                                                                                                            ccAAAGTgaggcaatcaagatcagccaaagggctgctcccatatctcgcctcaactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcatca        >  6:209618‑M1/1‑7 (MQ=255)                                                                                                                                            ccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcat         <  5:29821‑M2/147‑95 (MQ=255)                                                                                                                                              aaaGTTGAGGCGATATATCGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATc     <  3:191987/149‑1 (MQ=255)                                                                                                                                                aGTgaggcaatcaagatcagccaaagggctgctcccatatctcgcctcaactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcatcagtag    <  3:186203‑M1/149‑147 (MQ=255)                                                                                                                                                aGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCTTTCTTCTTTTGTCCCGTTGTTTTCTTATCGt   <  1:195642/149‑1 (MQ=255)                                                                                                                                                 gTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGtt  <  8:285637/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCAGATGAAACCCGTATGGGGCGGACGAAACCTAAGGCATCGATGCCTACTGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCT‑GATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTT  >  NC_002947/2785365‑2785657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.