New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2840212	45 (0.890)	3 (0.060)	3/242	NT	6.5%	coding (370/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2840275	44 (0.930)					coding (307/678 nt)	PP_2491	ThiJ/PfpI family protein

ACGGCACCACCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2840059‑2840212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcggcCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCGCCGGCAAGCCTGTTGCGGCGGTTTGCCATGCGCCCGCGGTGCTGCGTCACGTCAAGGGCAGCGACGGCCAGCCAT  <  NC_002947/2840275‑2840134                                                                                                                                                                                                                                                                                                          ACGGCACCACCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCG                                                                                                                                                     >  6:169710/1‑149    GCACCACCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGC                                                                                                                                                       >  5:323617/1‑144    GCACCACCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGC                                                                                                                                                       <  6:323617/144‑1     CACCACCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGG                                                                                                                                                 <  5:18525/149‑1                                                                       GACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGC                                                                               <  5:169710/149‑1                                                                                      GTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCG                                                                             >  3:10547/1‑136                                                                                      GTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCG                                                                             <  4:10547/136‑1                                                                                                                                                    CGGCGGCCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCGCCGGCAAGCCTGTTGCGGCGGTTTGCCATGCGCCCGCGGTGCTGCGTCACGTCAAGGGCAGCGACGGCCAGCCAT  <  3:4836/149‑1                                                                                                                                                    CGGCGGCCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCGCCGGCAAGCCTGTTGCGGCGGTTTGCCATGCGCCCGCGGTGCTGCGTCACGTCAAGGGCAGCGACG           <  3:98277/140‑1                                                                                                                                                    CGGCGGCCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCGCCGGCAAGCCTGTTGCGGCGGTTTGCCATGCGCCCGCGGTGCTGCGTCACGTCAAGGGCAGCGACG           >  4:98277/1‑140                                                                                                                                                                                                                                                                                                          ACGGCACCACCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2840059‑2840212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcggcCATGGCCCGCTGTGGGACTTGGCCGAAGATGCCGCGTCCATCGCCTTGATTGAGCGCTCCATCGCCGCCGGCAAGCCTGTTGCGGCGGTTTGCCATGCGCCCGCGGTGCTGCGTCACGTCAAGGGCAGCGACGGCCAGCCAT  <  NC_002947/2840275‑2840134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.