New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2840212	45 (0.890)	3 (0.060)	3/242	NT	6.5%	coding (370/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2840275	44 (0.930)					coding (307/678 nt)	PP_2491	ThiJ/PfpI family protein

ATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTGGG  >  NC_002947/2840134‑2840420                                                                                                                                              |                                                                                                                                                  aTGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccg                                                                                                                                            <  3:4836‑M2/149‑8 (MQ=255)      tggcCGTCGCTGCCCTTGACGTGACGCCGCACCGCGGGCGCATGGCAAACCGCCGCACCAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTa                                                                                                                                       >  7:220874/1‑149 (MQ=255)          cGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccg                                                                                                                                            >  4:98277‑M2/1‑133 (MQ=255)          cGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccg                                                                                                                                            <  3:98277‑M2/140‑8 (MQ=255)             cgcgGCCGTTGACGGTCCCCAGCACCGGGGGCGATTGCCAAACCGCCGAAACAGGGTTGCCGGCGGCGTTGGCGCGCTCAATCACGCCGATGCACGCGGCATCTTCGGCCAAGCCCCACAGCGGGCCATGGCCGCCGGGGTATAAcaca                                                                                                                                <  4:4836/149‑1 (MQ=255)             cGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAAcaca                                                                                                                                <  6:111896/149‑1 (MQ=255)               cTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGc                                                                                                                              <  6:115004/149‑1 (MQ=255)                tGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCa                                                                                                                             >  5:150344/1‑149 (MQ=255)                   ccTTCACCTGACGCAGCACAGCGATCGAATGGCAAACCGACGCAACAGGCTTGCCGGAGGCGATGGAGCTCTAAATCAAGTCGATGGACTCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATc                                                                                                                           >  6:148816/1‑148 (MQ=255)                               gcagcaCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCgggg                                                                                                                                         >  4:204920/1‑122 (MQ=255)                               gcagcaCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCgggg                                                                                                                                         <  3:204920/122‑1 (MQ=255)                                cagcaCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGt                                                                                                             <  1:232010/149‑1 (MQ=255)                                    aCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGaa                                                                                                                                    >  3:24992/1‑122 (MQ=255)                                    aCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGaa                                                                                                                                    <  4:24992/122‑1 (MQ=255)                                    aCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGttt                                                                                                           >  6:269534/1‑147 (MQ=255)                                           gcgcATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTg                                                                                                  <  4:49158/149‑1 (MQ=255)                                                tGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCACATTCGGCGCCGTTTAAGTCGCGGAGttt                                                                                             >  5:205331/1‑149 (MQ=255)                                                         gccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGtt                                                                                    <  3:110997/149‑1 (MQ=255)                                                         gccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGtt                                                                                    >  4:314031/1‑149 (MQ=255)                                                          ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTa                                                                                                                                       >  1:83391/1‑97 (MQ=255)                                                          ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTa                                                                                                                                       <  2:83391/97‑1 (MQ=255)                                                          ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTg                                                                                   >  5:293081/1‑149 (MQ=255)                                                          ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTg                                                                                   <  4:56109/149‑1 (MQ=255)                                                                cAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGc                                                                                                    <  8:161528/126‑1 (MQ=255)                                                                cAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGc                                                                                                    >  7:161528/1‑126 (MQ=255)                                                                 aGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAgcg                                                                            <  6:54088/149‑1 (MQ=255)                                                                     ttGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCgcgtg                                                                        >  5:1112/1‑149 (MQ=255)                                                                      tGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCgcgtgc                                                                       >  5:117828/1‑149 (MQ=255)                                                                          ggcggcGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTgg                                                                   <  8:220874/149‑1 (MQ=255)                                                                            cggcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgac                                                                              <  4:10547‑M2/136‑70 (MQ=255)                                                                            cggcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgac                                                                              >  3:10547‑M2/1‑67 (MQ=255)                                                                             ggcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGa                                                                <  6:117828/149‑1 (MQ=255)                                                                              gcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgacggccagccattggtc                                                               <  5:169710‑M2/149‑85 (MQ=255)                                                                                    gAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGaat                                                          <  6:293081/148‑1 (MQ=255)                                                                                         cTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAAtct                                                    >  5:51353/1‑149 (MQ=255)                                                                                         cTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAAtct                                                    >  4:155357/1‑149 (MQ=255)                                                                                          tcaatcaaGGCGATGGACGCGGCATCTTCGGCCAAGTCACACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAAtctc                                                   >  2:118434/1‑149 (MQ=255)                                                                                            aatcaaGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAAtctc                                                   <  3:314031/147‑1 (MQ=255)                                                                                            aatcaaGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGa                                                 <  6:150344/149‑1 (MQ=255)                                                                                             atcaaGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCg                                                  >  7:67491/1‑147 (MQ=255)                                                                                                    cGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGcggcgg                                         <  5:269534/149‑1 (MQ=255)                                                                                                           cgcgGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATAAAATTGGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTTAATCAATCTCGAAGCGGCGGGTGGCGt                                  <  2:311737/149‑1 (MQ=255)                                                                                                                 cccggcGGCCATGGCCCGCTGTGGGACTTGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCt                            >  8:71184/6‑149 (MQ=255)                                                                                                                  tCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTg                           >  7:156423/1‑149 (MQ=255)                                                                                                                    ttCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGc                                                                  <  5:9898/108‑1 (MQ=255)                                                                                                                    ttCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGc                                                                  >  6:9898/1‑108 (MQ=255)                                                                                                                    ttCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTgg                          >  1:124537/1‑148 (MQ=255)                                                                                                                     tCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTgg                          >  6:157099/1‑147 (MQ=255)                                                                                                                      cGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGaa                        <  2:124537/148‑1 (MQ=255)                                                                                                                          cAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAg                   <  5:148816/149‑1 (MQ=255)                                                                                                                           aaGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGaatcaat                                                      >  6:17722/1‑113 (MQ=255)                                                                                                                           aaGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGaatcaat                                                      <  5:17722/113‑1 (MQ=255)                                                                                                                                  acaGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGGTGAGTTTTTGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGAGTCGGTCTGGAAGTCAGGCTGATTg           >  3:59901/1‑149 (MQ=255)                                                                                                                                  acaGCGGGACATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGCCTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCAttc           >  7:112489/1‑148 (MQ=255)                                                                                                                                         gCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTg    >  8:190766/1‑149 (MQ=255)                                                                                                                                          ccATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTgg   >  2:149089/1‑149 (MQ=255)                                                                                                                                          ccATGGCCGCAGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGTGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTgg   >  6:205909/1‑149 (MQ=255)                                                                                                                                           cagggCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGGTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTggg  <  8:67491/146‑1 (MQ=255)                                                                                                                                           cATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTggg  <  5:157099/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                  ATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGACTGAATCAATCTCGAAGCGGCGGGTGGCGTCGGTCTGGAAGTCAGGCTCATTGCTCTTTGGG  >  NC_002947/2840134‑2840420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.