New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2840212	45 (0.890)	3 (0.060)	3/242	NT	6.5%	coding (370/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2840275	44 (0.930)					coding (307/678 nt)	PP_2491	ThiJ/PfpI family protein

CCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGAC  >  NC_002947/2840068‑2840359                                                                                                                                                 |                                                                                                                                                    ccTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATg                                                                                                                                                 <  2:106706/149‑1 (MQ=255)     ggTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACCTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAgc                                                                                                                                             <  7:192170/149‑1 (MQ=255)              tACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACATGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCtcaatc                                                                                                                                     >  3:56109/1‑148 (MQ=255)                   cctcctCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGc                                                                                                                                >  8:236767/1‑148 (MQ=255)                     tcctcTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGAt                                                                                                                             >  6:170821/1‑149 (MQ=255)                       ctctTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATgg                                                                                                                           <  5:162150/149‑1 (MQ=255)                       ctctTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGATCAATCAAGGCGATgg                                                                                                                           >  4:110997/1‑149 (MQ=255)                          ttCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGAcg                                                                                                                        >  2:232010/1‑149 (MQ=255)                            cGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGAcg                                                                                                                        <  5:143586/147‑1 (MQ=255)                                gTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCAt                                                                                                                  >  5:209429/1‑149 (MQ=255)                                    cTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTc                                                                                                              >  3:49158/1‑149 (MQ=255)                                      gAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCgg                                                                                                            >  5:54088/1‑149 (MQ=255)                                          ccGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGcc                                                                                                          >  3:128331/1‑147 (MQ=255)                                            ggTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGt                                                                                                      <  6:209429/149‑1 (MQ=255)                                            ggTGACCGCCTTGCCGCCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGt                                                                                                      <  7:236767/149‑1 (MQ=255)                                             gTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCGACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTc                                                                                                     <  7:199127/149‑1 (MQ=255)                                                    ccTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGc                                                                                              >  1:311737/1‑149 (MQ=255)                                                        gCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCgg                                                                                            <  4:128331/147‑1 (MQ=255)                                                              gACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCcatggcccgctgtgggacttggccgaagatgccgcgtccatcgccttgattgagcgctccatcgc                                                                                    <  5:169710‑M1/149‑66 (MQ=255)                                                                   aTGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccg                                                                               <  3:4836‑M2/149‑8 (MQ=255)                                                                        tggcCGTCGCTGCCCTTGACGTGACGCCGCACCGCGGGCGCATGGCAAACCGCCGCACCAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTa                                                                          >  7:220874/1‑149 (MQ=255)                                                                            cGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccg                                                                               <  3:98277‑M2/140‑8 (MQ=255)                                                                            cGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccg                                                                               >  4:98277‑M2/1‑133 (MQ=255)                                                                             gTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCcatggcccgctgtgggacttggccgaagatgccgcgtccatcgccttgattgagcgctccatcgccg                                                                                  <  4:10547‑M1/136‑68 (MQ=255)                                                                             gTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCcatggcccgctgtgggacttggccgaagatgccgcgtccatcgccttgattgagcgctccatcgccg                                                                                  >  3:10547‑M1/1‑69 (MQ=255)                                                                               cgcgGCCGTTGACGGTCCCCAGCACCGGGGGCGATTGCCAAACCGCCGAAACAGGGTTGCCGGCGGCGTTGGCGCGCTCAATCACGCCGATGCACGCGGCATCTTCGGCCAAGCCCCACAGCGGGCCATGGCCGCCGGGGTATAAcaca                                                                   <  4:4836/149‑1 (MQ=255)                                                                               cGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAAcaca                                                                   <  6:111896/149‑1 (MQ=255)                                                                                 cTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGc                                                                 <  6:115004/149‑1 (MQ=255)                                                                                  tGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCa                                                                >  5:150344/1‑149 (MQ=255)                                                                                     ccTTCACCTGACGCAGCACAGCGATCGAATGGCAAACCGACGCAACAGGCTTGCCGGAGGCGATGGAGCTCTAAATCAAGTCGATGGACTCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATc                                                              >  6:148816/1‑148 (MQ=255)                                                                                                 gcagcaCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCgggg                                                                            >  4:204920/1‑122 (MQ=255)                                                                                                 gcagcaCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCgggg                                                                            <  3:204920/122‑1 (MQ=255)                                                                                                  cagcaCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGt                                                <  1:232010/149‑1 (MQ=255)                                                                                                      aCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGaa                                                                       >  3:24992/1‑122 (MQ=255)                                                                                                      aCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGaa                                                                       <  4:24992/122‑1 (MQ=255)                                                                                                      aCCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGttt                                              >  6:269534/1‑147 (MQ=255)                                                                                                       ccGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAgcgc                                                                                                                                           >  1:12743/1‑53 (MQ=255)                                                                                                       ccGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAgcgc                                                                                                                                           <  2:12743/53‑1 (MQ=255)                                                                                                             gcgcATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTg                                     <  4:49158/149‑1 (MQ=255)                                                                                                                  tGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCACATTCGGCGCCGTTTAAGTCGCGGAGttt                                >  5:205331/1‑149 (MQ=255)                                                                                                                           gccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGtt                       >  4:314031/1‑149 (MQ=255)                                                                                                                           gccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGtt                       <  3:110997/149‑1 (MQ=255)                                                                                                                            ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTa                                                                          >  1:83391/1‑97 (MQ=255)                                                                                                                            ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTa                                                                          <  2:83391/97‑1 (MQ=255)                                                                                                                            ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTg                      >  5:293081/1‑149 (MQ=255)                                                                                                                            ccgcAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTg                      <  4:56109/149‑1 (MQ=255)                                                                                                                                  cAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGc                                       >  7:161528/1‑126 (MQ=255)                                                                                                                                  cAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGc                                       <  8:161528/126‑1 (MQ=255)                                                                                                                                   aGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAgcg               <  6:54088/149‑1 (MQ=255)                                                                                                                                       ttGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCgcgtg           >  5:1112/1‑149 (MQ=255)                                                                                                                                        tGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCgcgtgc          >  5:117828/1‑149 (MQ=255)                                                                                                                                           cggcggCcatggcccgctgtgggacttggccgaagatgccgcgtccatcgccttgattgagcgctccatcgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgacggccagccat       <  3:4836‑M1/149‑143 (MQ=255)                                                                                                                                           cggcggCcatggcccgctgtgggacttggccgaagatgccgcgtccatcgccttgattgagcgctccatcgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgacg                <  3:98277‑M1/140‑134 (MQ=255)                                                                                                                                           cggcggCcatggcccgctgtgggacttggccgaagatgccgcgtccatcgccttgattgagcgctccatcgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgacg                >  4:98277‑M1/1‑7 (MQ=255)                                                                                                                                            ggcggcGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTgg      <  8:220874/149‑1 (MQ=255)                                                                                                                                              cggcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgac                 >  3:10547‑M2/1‑67 (MQ=255)                                                                                                                                              cggcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgac                 <  4:10547‑M2/136‑70 (MQ=255)                                                                                                                                               ggcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGa   <  6:117828/149‑1 (MQ=255)                                                                                                                                                gcgATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGgccgccggcaagcctgttgcggcggtttgccatgcgcccgcggtgctgcgtcacgtcaagggcagcgacggccagccattggtc  <  5:169710‑M2/149‑85 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CCTGGGTCAGGCCTACAGCCTCCTCTTCGCTGTTGCTGAAGCCGGTGACCGCCTTGCCGGCGACCAATGGCTGGCCGTCGCTGCCCTTGACGTGACGCAGCACCGCGGGCGCATGGCAAACCGCCGCAACAGGCTTGCCGGCGGCGATGGAGCGCTCAATCAAGGCGATGGACGCGGCATCTTCGGCCAAGTCCCACAGCGGGCCATGGCCGCCGGGGTAGAACACAGCATCAAATTCGGCGCCGTTTAAGTCGCTGAGTTTTAGCGTGTTGGCCAGCGCGTGCGTGGCGAC  >  NC_002947/2840068‑2840359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.