New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3276813 =	56 (1.110)	5 (0.110)	5/236	NT	9.8%	intergenic (‑118/+165)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	3276841 =	41 (0.890)					intergenic (‑146/+137)	PP_2875/ampC	hypothetical protein/beta‑lactamase

GTTGATTGTCGGACAAAACGACAGAATGTAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGGCCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3276970‑3276813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaggccgtcTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCC  >  NC_002947/3276841‑3276986                                                                                                                                                                                                                                                                                                                  GTTGATTGTCGGACAAAACGACAGAATGTAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACG                                                                                                                                                             >  7:239918/1‑149     ATTGTCGGACAAAACGACAGAATGTAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGG                                                                                                                                                         <  8:75928/149‑1                             TAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACC                                                                                                                                  <  3:253325/148‑1                             TAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTT                                                                                                                                        >  3:239821/1‑142                             TAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTT                                                                                                                                        <  4:239821/142‑1                                                                                                                                         CTGCGCGGTAACGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGA                                                                                                                   <  7:298017/55‑1                                                                                                                                         CTGCGCGGTAACGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGA                                                                                                                   >  8:298017/1‑55                                                                                                                                                       AGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTAT       <  3:55251/149‑1                                                                                                                                                       AGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTA        >  4:55251/1‑148                                                                                                                                                            GTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCC  <  5:13040/149‑1                                                                                                                                                                                                                                                                                                                  GTTGATTGTCGGACAAAACGACAGAATGTAGTGAGCAAAAATATTCACTACAAAATGGTTGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGGCCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3276970‑3276813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaggccgtcTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCC  >  NC_002947/3276841‑3276986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.