New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3276813 =	56 (1.110)	5 (0.110)	5/236	NT	9.8%	intergenic (‑118/+165)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	3276841 =	41 (0.890)					intergenic (‑146/+137)	PP_2875/ampC	hypothetical protein/beta‑lactamase

CATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGG  >  NC_002947/3276693‑3276988                                                                                                                                                     |                                                                                                                                                    cATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGTCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCt                                                                                                                                                     <  3:74871/149‑1 (MQ=255)   ttCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTgg                                                                                                                                                   <  5:289038/149‑1 (MQ=255)   ttCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTgg                                                                                                                                                   <  4:113110/149‑1 (MQ=255)         ggTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACAcc                                                                                                                                             <  1:114745/149‑1 (MQ=255)         ggTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACAcc                                                                                                                                             >  1:195288/1‑149 (MQ=255)         ggTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTCCGTTACCGCGCAGGCCGTCTGGAACAcc                                                                                                                                             <  1:181106/149‑1 (MQ=255)                   tagtgagcaaaaatattcactacaaaatggttgacgccgttcatcgcgcttgggcatgatgaagccgtctccccgatcgggagcggtggcaagggtgttccggacggcctgcgttaccgcgcaggccgtcTGGAACACCCTTGCCAcc                                                                                                                                    <  3:253325‑M2/18‑1 (MQ=255)                   tagtgagcaaaaatattcactacaaaatggttgacgccgttcatcgcgcttgggcatgatgaagccgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgttaccgcgcaggccgtcTGGAACACCCtt                                                                                                                                          <  4:239821‑M2/12‑1 (MQ=255)                   tagtgagcaaaaatattcactacaaaatggttgacgccgttcatcgcgcttgggcatgatgaagccgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgttaccgcgcaggccgtcTGGAACACCCtt                                                                                                                                          >  3:239821‑M2/131‑142 (MQ=255)                    caGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGc                                                                                                                                  <  2:195288/149‑1 (MQ=255)                            gcTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATc                                                                                                                          <  8:151310/149‑1 (MQ=255)                                tCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCgg                                                                                                                        <  5:277389/147‑1 (MQ=255)                                  aCGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCggg                                                                                                                       >  2:147355/1‑146 (MQ=255)                                                tACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATg                                                                                                      >  6:234390/1‑149 (MQ=255)                                                tACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACAGCGCAGGCCGTCTGGAACACCCTTTCCACCGCTCCCGATCGGGGAGACGGCTTCATCATg                                                                                                      >  5:17471/1‑149 (MQ=255)                                                  ccAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTcc                                                                                                                               >  3:208371/1‑122 (MQ=255)                                                  ccAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGcc                                                                                                    >  8:239918/1‑149 (MQ=255)                                                  ccAAGGCTGCTACAGCAGCATCGCAACAGGGGCGTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTcc                                                                                                                               <  4:208371/122‑1 (MQ=255)                                                           ctACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGa                                                                                           >  6:166189/1‑149 (MQ=255)                                                               agcagcATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCAACGGACGGCCTGCGTTACCGCGAAGGCCGTCTGGAACAACCTTGCCACCGCTCCCGATCGGGGAGCCGGCGTCATCATGCCCAAGCGCGATGaa                                                                                       >  1:85841/1‑149 (MQ=255)                                                                  agcaTCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCg                                                                                                                             <  8:53428/108‑1 (MQ=255)                                                                  agcaTCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCg                                                                                                                             >  7:53428/1‑108 (MQ=255)                                                                   gcaTCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGc                                                                                   <  4:138268/149‑1 (MQ=255)                                                                     aTCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGt                                                                                 >  5:31171/1‑149 (MQ=255)                                                                                 gCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGACGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGt                                                                     <  6:318599/149‑1 (MQ=255)                                                                                   tttCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGc                                                                                                                                        >  5:331168/1‑80 (MQ=255)                                                                                   tttCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGc                                                                                                                                        <  6:331168/80‑1 (MQ=255)                                                                                     tctcACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGt                                                                  <  6:17471/148‑1 (MQ=255)                                                                                         aCGCTGCCTTTTGGACAGTTTCCCTCTCCTCGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAata                                                             >  8:55322/1‑149 (MQ=255)                                                                                               ccTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATAttttt                                                        <  5:234390/148‑1 (MQ=255)                                                                                                     ggACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCAc                                                                                                                                     <  8:250286/65‑1 (MQ=255)                                                                                                     ggACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCAc                                                                                                                                     >  7:250286/1‑65 (MQ=255)                                                                                                     ggACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCAc                                                  >  4:49838/1‑148 (MQ=255)                                                                                                       ggtggcaagggtgttccaGACGGCCTGCGCGGTAACGCAGGCCGTCCGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTa                                                <  3:253325‑M1/130‑1 (MQ=255)                                                                                                          gTTTCCCTCTCCTCGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACAtt                                            <  7:55322/149‑1 (MQ=255)                                                                                                          gTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACAtt                                            <  7:120347/149‑1 (MQ=255)                                                                                                             tCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCt                                          <  2:85841/148‑1 (MQ=255)                                                                                                             tCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCt                                          <  3:49838/148‑1 (MQ=255)                                                                                                             aagggtgttccaGACGGCCTGCGCGGTAACGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTa                                                <  4:239821‑M1/130‑1 (MQ=255)                                                                                                             aagggtgttccaGACGGCCTGCGCGGTAACGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTa                                                >  3:239821‑M1/13‑142 (MQ=255)                                                                                                              cccTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGt                                        >  7:44373/1‑149 (MQ=255)                                                                                                                  ctcCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCACCCGATCGGGGAGACGGCTTAATCATGCCCAAGCGCGATGAACGGCGGCAACCAATTTGAAGTGAATATTTTTGCTCACTACATTATGTCGta                                    >  8:254164/1‑148 (MQ=255)                                                                                                                   tcCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCAc                                                  <  1:10804/134‑1 (MQ=255)                                                                                                                   tcCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCAc                                                  >  2:10804/1‑134 (MQ=255)                                                                                                                   tcCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGttt                                   >  5:4911/1‑149 (MQ=255)                                                                                                                     cACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGTACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGtt                                    <  1:147355/146‑1 (MQ=255)                                                                                                                     cACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGttt                                   <  6:4911/147‑1 (MQ=255)                                                                                                                     cACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTg                                 >  2:213231/1‑149 (MQ=255)                                                                                                                     cACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTg                                 >  2:156578/1‑149 (MQ=255)                                                                                                                        ggacggCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTcc                              <  5:166189/149‑1 (MQ=255)                                                                                                                              CCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAAt                        <  8:75928‑M1/149‑1 (MQ=255)                                                                                                                               ctgcgcggtaacgcaggccgtcTGGAACACCCTTGCCACCGCTCCCGATCGGGga                                                                                                                     <  7:298017‑M2/33‑1 (MQ=255)                                                                                                                               ctgcgcggtaacgcaggccgtcTGGAACACCCTTGCCACCGCTCCCGATCGGGga                                                                                                                     >  8:298017‑M2/23‑55 (MQ=255)                                                                                                                                  CGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAAc                    >  7:239918‑M1/1‑149 (MQ=255)                                                                                                                                             aggccgtcTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTtat         <  3:55251‑M2/141‑1 (MQ=255)                                                                                                                                             aggccgtcTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTta          >  4:55251‑M2/9‑148 (MQ=255)                                                                                                                                                  gtcTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGcc    <  5:13040‑M2/146‑1 (MQ=255)                                                                                                                                                     tGGCACACCCTTGACACCGCTCACGATAGGGGAGACGGCATCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTCAATATTTTTGCTCACTACATACTGTCGTTTTTTCCGACTATCAACGCGAGGGTTATAAGGCgg  >  4:67790/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGG  >  NC_002947/3276693‑3276988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.