| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3346409 = | 47 (0.930) | 4 (0.080) | 4/246 | NT | 8.5% | coding (91/1371 nt) | PP_2942 | two‑component system response regulator |
| ? | NC_002947 | 3346465 = | 41 (0.850) | coding (35/1371 nt) | PP_2942 | two‑component system response regulator | |||||
CCTTTGACCTAAGCGCTCGTTGAGCTCGAGTGCCTCCATCGATCGACCGCGTGAGGCCTGCCATGGAAGTGCAACCGAACCCGAACCCACCCTATCGGCCGACCGTGTTGCTAGTGGACGACGAGGAGTCGATCCTTAGCAGTCTGCGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3346561‑3346409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCAG > NC_002947/3346465‑3346612 CCTTTGACCTAAGCGCTCGTTGAGCTCGAGTGCCTCCATCGATCGACCGCGTGAGGCCTGCCATGGAAGTGCAACCGAACCCGAACCCACCCTATCGGCCGACCGTGTTGCTAGTGGACGACGAGGAGTCGATCCTTAGCAGTCTGCGT > 3:49225/1‑149 CTATCGGCCGACCGTGTTGCTAGTGGACGACGAGGAGTCGATCCTTAGCAGTCTGCGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCT > 4:306918/1‑148 GCCGACCGTGTTGCTAGTGGACGACGAGGAGTCGATCGTTAGCAGGCTGCGTCGGCCGATAGGGTGGGTTCGGGGTCGGGTGCGCTGGCATGGGAGGCCTCACGCGGTCGATCGATGGGGGCACTCGAGCgccag > 8:72142/1‑130 GCCGACCGTGTTGCTAGTGGACGACGAGGAGTCGATCCTTAGCAGTCTGCGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAAC < 7:72142/135‑1 ATCCTTAGCAGTCTGCGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGA < 3:306918/149‑1 GTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGT < 7:28958/149‑1 GCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGTTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCA < 6:109360/149‑1 CCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCAG < 5:71815/149‑1 CCTTTGACCTAAGCGCTCGTTGAGCTCGAGTGCCTCCATCGATCGACCGCGTGAGGCCTGCCATGGAAGTGCAACCGAACCCGAACCCACCCTATCGGCCGACCGTGTTGCTAGTGGACGACGAGGAGTCGATCCTTAGCAGTCTGCGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3346561‑3346409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCAG > NC_002947/3346465‑3346612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |