New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3346409 =	47 (0.930)	4 (0.080)	4/246	NT	8.5%	coding (91/1371 nt)	PP_2942	two‑component system response regulator
	?	NC_002947	3346465 =	41 (0.850)					coding (35/1371 nt)	PP_2942	two‑component system response regulator

CATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCAG  >  NC_002947/3346317‑3346612                                                                                                                                                       |                                                                                                                                                     catcaCCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGcc                                                                                                                                                      >  4:139960/1‑149 (MQ=255)       agcgctcgttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAg                                                                                                                                                 >  4:306918‑M1/87‑148 (MQ=255)        aGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAggg                                                                                                                                               <  6:124942/149‑1 (MQ=255)         gATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCAGGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                                                                                              <  7:77562/149‑1 (MQ=255)         gATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                                                                                              <  8:224383/149‑1 (MQ=255)         gATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                                                                                              <  3:139960/149‑1 (MQ=255)           tCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGCTGCGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                                                                                              <  1:96861/149‑1 (MQ=255)            cAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggtgg‑g                                                                                                                                          >  4:293053/1‑149 (MQ=255)                 gggCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTgg‑gttcgg                                                                                                                                     <  7:137710/149‑1 (MQ=255)                       tCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑gttcgggttcgg                                                                                                                               >  8:28958/1‑149 (MQ=255)                          gCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTg                                                                                                                            <  3:293053/149‑1 (MQ=255)                                tGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTc                                                                                                                      >  4:150147/1‑149 (MQ=255)                                  cgcCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCAc                                                                                                                         >  8:9765/1‑144 (MQ=255)                                  cgcCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCAc                                                                                                                         <  7:9765/144‑1 (MQ=255)                                          ccTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggtgg                                                                                                                                            <  7:78373/118‑1 (MQ=255)                                          ccTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggtgg                                                                                                                                            >  8:78373/1‑118 (MQ=255)                                              ttCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCa                                                                                                        >  4:49225/1‑149 (MQ=255)                                                     cTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGtc                                                                                                 <  3:150147/149‑1 (MQ=255)                                                            cgaGCTTCAGGTCATAGGGTTGGCCACTCAATAGC‑‑CGACGCTGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGT‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCAcgcg                                                                                                    <  8:188075/137‑1 (MQ=255)                                                            ccAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGAATCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGCTGG‑GTTAGGGTTCGGTTGCACTTCCATGGCAGGCCTCAcgcg                                                                                                    >  7:188075/1‑139 (MQ=255)                                                                          tAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGc                                                                            >  8:16286/1‑149 (MQ=255)                                                                             ggTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCGGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTc                                                                          >  3:55355/1‑148 (MQ=255)                                                                             ggTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCa                                                                         <  4:286342/149‑1 (MQ=255)                                                                              gTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCa                                                                                                               <  5:150815/110‑1 (MQ=255)                                                                              gTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCa                                                                                                               >  6:150815/1‑110 (MQ=255)                                                                                    cACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAgcg                                                                  >  7:65047/1‑149 (MQ=255)                                                                                     aCGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGCGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAgc                                                                   >  8:58351/1‑147 (MQ=255)                                                                                     aCGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGCGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAgc                                                                   <  7:58351/147‑1 (MQ=255)                                                                                      cGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCt                                                                <  5:24741/149‑1 (MQ=255)                                                                                         ctatcggccgaccgtgttgctagtggacgacgaggagtcgatccttagcagtctgcgtcggcCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCt                                                                >  4:306918‑M2/63‑148 (MQ=255)                                                                                               gccgaccgtgttgctagtggacgacgaggagtcgatcgttagcaggctgcgtcggcCGATAGGGTGG‑GTTCGGGGTCGGGTGCGCTGGCATGGGAGGCCTCACGCGGTCGATCGATGGGGGCACtcgagcgccag                                                                       >  8:72142‑M2/57‑130 (MQ=255)                                                                                               gccgaccgtgttgctagtggacgacgaggagtcgatccttagcagtctgcgtcggcCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAAc                                                                       <  7:72142‑M2/79‑1 (MQ=255)                                                                                                   ACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAgg                                                     >  3:49225‑M1/1‑149 (MQ=255)                                                                                                         aCTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGa                                                >  6:26560/1‑148 (MQ=255)                                                                                                           tGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAg                                                             <  6:125206/133‑1 (MQ=255)                                                                                                           tGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAg                                                             >  5:125206/1‑133 (MQ=255)                                                                                                              tAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCAttt                                          >  5:109360/1‑149 (MQ=255)                                                                                                               aaGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCAtttt                                         >  2:293419/1‑149 (MQ=255)                                                                                                                 ggATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTc                                       <  7:16286/149‑1 (MQ=255)                                                                                                                       aCTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGAGTTCGGGTACGGTTGCACTTCCATGGCAGGCCTCCCCCGGTCCAACGATGCAGGCACTCGAGATCAACGACCGCTTAGGTCAAAGGCTTCATCATTTTTCcgcg                                   >  1:61739/1‑148 (MQ=255)                                                                                                                       aCTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGa                                  >  8:94611/1‑148 (MQ=255)                                                                                                                           ctcGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAggg                             >  7:65733/1‑148 (MQ=255)                                                                                                                           ctcGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGgt                             >  8:147577/1‑149 (MQ=255)                                                                                                                            tcgtcgTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGgtg                            >  6:71815/1‑149 (MQ=255)                                                                                                                            tcgtcgTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGgtg                            >  3:120584/1‑149 (MQ=255)                                                                                                                                 atccttagcagtctgcgtcggcCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGa                       <  3:306918‑M2/127‑1 (MQ=255)                                                                                                                                     aCTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGc                     >  7:254479/1‑147 (MQ=255)                                                                                                                                           aaCACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGAGCATTTTTCCGCGACAGGTGTCGGAGCAAGGAGTg             >  5:99745/1‑149 (MQ=255)                                                                                                                                               cGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCgg         >  6:119959/1‑149 (MQ=255)                                                                                                                                                ggTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCggg        <  5:26560/149‑1 (MQ=255)                                                                                                                                                 gtcggcCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGt       <  7:28958‑M2/143‑1 (MQ=255)                                                                                                                                                     gcCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGTTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCa   <  6:109360‑M2/147‑1 (MQ=255)                                                                                                                                                      cCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCAg  <  5:71815‑M2/148‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                     CATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGG‑GTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCTTAGGTCAAAGGCTAGATCATTTTTCCGCGACAGGTGTCGGAGCAAGGCGTGGCGGGTGGCAG  >  NC_002947/3346317‑3346612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.