New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3346409 =	47 (0.930)	4 (0.080)	4/246	NT	8.5%	coding (91/1371 nt)	PP_2942	two‑component system response regulator
	?	NC_002947	3346465 =	41 (0.850)					coding (35/1371 nt)	PP_2942	two‑component system response regulator

TGATTGATCTGTGCCAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCT  >  NC_002947/3346261‑3346550                                                                                                                                                     |                                                                                                                                                ctgccacccgccacgccttgctccgacacctgtcgcggaaaaatgatctagcctttgacctaagcgctcgttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgg                                                                                                                                                 <  5:71815‑M1/1‑1 (MQ=255)  tgccacccgccacgccttgctccgacacctgtcgcggaaaaatgatctagcctttgaactaagcgctcgttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgGc                                                                                                                                                <  6:109360‑M1/2‑1 (MQ=255)   attgatCTGTGCCAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGc                                                                                                                                                <  6:32009/148‑1 (MQ=255)      acccgccacgccttgctccgacacctgtcgcggaaaaatgatctagcctttgacctaagcgctcgttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgGC‑‑CGAc                                                                                                                                          <  7:28958‑M1/6‑1 (MQ=255)        tCTGTGCCAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACg                                                                                                                                         <  4:39469/148‑1 (MQ=255)        tCTGTGCCAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGc                                                                                                                                        >  3:39469/1‑149 (MQ=255)            tgCCAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGAc                                                                                                                                    <  6:28485/149‑1 (MQ=255)              ccAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACt                                                                                                                                   <  8:58126/148‑1 (MQ=255)               cAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGc                                                                                                                                 >  5:60270/1‑149 (MQ=255)               cAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGc                                                                                                                                 >  2:96861/1‑149 (MQ=255)                      tccgacacctgtcgcggaaaaatgatctagcctttgacctaagcgctcgttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgGC‑‑CGACGCAGACTGCTAAGGAt                                                                                                                          <  3:306918‑M1/22‑1 (MQ=255)                            ccGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGActc                                                                                                                    <  1:37472/149‑1 (MQ=255)                            ccGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGActc                                                                                                                    >  3:286342/1‑149 (MQ=255)                               tCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTa                                                                                                                               >  1:121001/1‑135 (MQ=255)                               tCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTa                                                                                                                               <  2:121001/135‑1 (MQ=255)                                ccATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCtcg                                                                                                                >  6:24741/1‑149 (MQ=255)                                   tACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCtcgtcg                                                                                                             <  2:211505/149‑1 (MQ=255)                                     ccAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATc                                                                                                                         <  5:27198/135‑1 (MQ=255)                                     ccAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATc                                                                                                                         >  6:27198/1‑135 (MQ=255)                                     ccAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCgtcgtc                                                                                                           <  6:60270/149‑1 (MQ=255)                                      cAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCgtcgtc                                                                                                           >  8:137710/1‑148 (MQ=255)                                      cAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTcc                                                                                                          >  7:224383/1‑149 (MQ=255)                                                         catcaCCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGcc                                                                                       >  4:139960/1‑149 (MQ=255)                                                               agcgctcgttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAg                                                                                  >  4:306918‑M1/87‑148 (MQ=255)                                                                aGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAggg                                                                                <  6:124942/149‑1 (MQ=255)                                                                 gATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCAGGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                               <  7:77562/149‑1 (MQ=255)                                                                 gATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                               <  8:224383/149‑1 (MQ=255)                                                                 gATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                               <  3:139960/149‑1 (MQ=255)                                                                   tCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGCTGCGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggt                                                                               <  1:96861/149‑1 (MQ=255)                                                                    cAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggtggg                                                                            >  4:293053/1‑149 (MQ=255)                                                                      gttgagctcgagtgcctccatcgatcgaccgcgtgaggcctgccatggaagtgcaaccgaacccgaacccaccctatcgGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGc                                                                                        <  7:72142‑M1/56‑1 (MQ=255)                                                                      ctggcgctcgagtgcccccatcgatcgaccgcgtgaggcctcccatgccagcgcacccgaccccgaacccaccctatcgGC‑‑CGACGCAGCCTGCTAACGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGc                                                                                        >  8:72142‑M1/80‑135 (MQ=255)                                                                         gggCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTgggttcgg                                                                       <  7:137710/149‑1 (MQ=255)                                                                               tCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGgttcgggttcgg                                                                 >  8:28958/1‑149 (MQ=255)                                                                                  gCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTg                                                              <  3:293053/149‑1 (MQ=255)                                                                                     aTCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTg                                                                                                                                  >  1:199926/1‑78 (MQ=255)                                                                                     aTCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTg                                                                                                                                  <  2:199926/78‑1 (MQ=255)                                                                                        tGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTc                                                        >  4:150147/1‑149 (MQ=255)                                                                                          cgcCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCAc                                                           >  8:9765/1‑144 (MQ=255)                                                                                          cgcCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCAc                                                           <  7:9765/144‑1 (MQ=255)                                                                                                  ccTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggtgg                                                                             >  8:78373/1‑118 (MQ=255)                                                                                                  ccTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAgggtgg                                                                             <  7:78373/118‑1 (MQ=255)                                                                                                      ttCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCa                                          >  4:49225/1‑149 (MQ=255)                                                                                                             cTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGtc                                   <  3:150147/149‑1 (MQ=255)                                                                                                                    cgaGCTTCAGGTCATAGGGTTGGCCACTCAATAGC‑‑CGACGCTGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGTGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCAcgcg                                      <  8:188075/137‑1 (MQ=255)                                                                                                                    ccAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGAATCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGCTGGGTTAGGGTTCGGTTGCACTTCCATGGCAGGCCTCAcgcg                                      >  7:188075/1‑139 (MQ=255)                                                                                                                                  tAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGc              >  8:16286/1‑149 (MQ=255)                                                                                                                                     ggTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCGGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTc            >  3:55355/1‑148 (MQ=255)                                                                                                                                     ggTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCa           <  4:286342/149‑1 (MQ=255)                                                                                                                                      gTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCa                                                 <  5:150815/110‑1 (MQ=255)                                                                                                                                      gTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCa                                                 >  6:150815/1‑110 (MQ=255)                                                                                                                                            cACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAgcg    >  7:65047/1‑149 (MQ=255)                                                                                                                                             aCGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGCGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAgc     >  8:58351/1‑147 (MQ=255)                                                                                                                                             aCGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGCGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAgc     <  7:58351/147‑1 (MQ=255)                                                                                                                                              cGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCt  <  5:24741/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                TGATTGATCTGTGCCAGCAAGGTGGCCCCGTCCATACCAGGCATGCGCGCATCGCTCATCACCAGATCAACCGGGCCCTCGGCCATCTGCGCCAGTGCCTGTTCGCCGCTGGTCGCCAGCTTCACGTCATAGGGTTGGCCACGCAATAGC‑‑CGACGCAGACTGCTAAGGATCGACTCCTCGTCGTCCACTAGCAACACGGTCGGCCGATAGGGTGGGTTCGGGTTCGGTTGCACTTCCATGGCAGGCCTCACGCGGTCGATCGATGGAGGCACTCGAGCTCAACGAGCGCT  >  NC_002947/3346261‑3346550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.