New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3400726	33 (0.660)	3 (0.060)	3/244	NT	8.4%	coding (475/528 nt)	PP_3007	hypothetical protein
	?	NC_002947	= 3400778	34 (0.710)					coding (423/528 nt)	PP_3007	hypothetical protein

GCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3400578‑3400726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggcTACCCGCGGCGGTGTGGCGCCGTCAGTCGACTGCACGGCGCAGAACAAAGGTGCCAGGCA  <  NC_002947/3400778‑3400719                                                                                                                                                                                                                   GCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGG                                                               <  6:323636/148‑1                                                  CATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCTACCCGCGGCGGTGTGGCGCCGTCAGTCGACTGCACGGCGCAGAACA               >  7:251054/1‑147                                                             GATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCTACCCGCGGCGGTGTGGCGCCGTCAGTCGACTGCACGGCGCAGAACAAAGGTGCCAGGCA  <  8:251054/149‑1                                                             GATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCTACCCGCGGCGGTGTGGCGCCGTCAGTCGACTGCACGGCGCAGAACAAAGGTGCCAGGC   <  1:56634/148‑1                                                                                                                                                                                                                   GCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3400578‑3400726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggcTACCCGCGGCGGTGTGGCGCCGTCAGTCGACTGCACGGCGCAGAACAAAGGTGCCAGGCA  <  NC_002947/3400778‑3400719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.