New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3400726	33 (0.660)	3 (0.060)	3/244	NT	8.4%	coding (475/528 nt)	PP_3007	hypothetical protein
	?	NC_002947	= 3400778	34 (0.710)					coding (423/528 nt)	PP_3007	hypothetical protein

GATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGCCATCCTTGGCCTGC  >  NC_002947/3400638‑3400925                                                                                                                                               |                                                                                                                                                    gATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGgcg                                                                                                                                             >  7:109412/1‑149 (MQ=255)    catcaCTTGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTg                                                                                                                                          >  6:167642/1‑149 (MQ=255)       caCTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGat                                                                                                                                       >  3:6716/1‑149 (MQ=255)            gCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCGCCCGCGGGTAGCCAGGCGCTGGAtata                                                                                                                                    <  1:167969/148‑1 (MQ=255)                   gTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGAcccc                                                                                                                           >  2:278048/1‑149 (MQ=255)                       ggTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGc                                                                                                                       <  2:51985/149‑1 (MQ=255)                           gggTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATgg                                                                                                                   <  7:258381/149‑1 (MQ=255)                              tGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGgcgc                                                                                                                <  1:278048/149‑1 (MQ=255)                                               tCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGc                                                                                                                       <  5:6138/125‑1 (MQ=255)                                               tCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGc                                                                                                                       >  6:6138/1‑125 (MQ=255)                                                       acaTAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGTCGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTg                                                                                            >  1:233286/1‑145 (MQ=255)                                                       acaTAGGCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTg                                                                                            <  2:233286/144‑1 (MQ=255)                                                        caTAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCtt                                                                                       >  8:197750/1‑148 (MQ=255)                                                        caTAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCtt                                                                                       <  7:197750/148‑1 (MQ=255)                                                          tAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                                                                                    <  8:109412/149‑1 (MQ=255)                                                             tCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAg                                                                                 >  8:112375/1‑149 (MQ=255)                                                                 ccTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                                                                                    <  5:51181/142‑1 (MQ=255)                                                                 ccTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGa                                                                             <  4:6716/149‑1 (MQ=255)                                                                 ccTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACCGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                                                                                    >  6:51181/1‑142 (MQ=255)                                                                     gTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAgg                                                                         <  5:167642/149‑1 (MQ=255)                                                                       aCTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAggg                                                                        >  6:59967/1‑148 (MQ=255)                                                                        cTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAgggg                                                                       <  7:112375/148‑1 (MQ=255)                                                                                cctgcctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCt                                                              >  4:254361/1‑149 (MQ=255)                                                                                  tgcctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAgccaggcaggtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatc                                                            <  8:251054‑M2/149‑90 (MQ=255)                                                                                   gcctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAgccaggcaggtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatc                                                            <  1:56634‑M2/148‑90 (MQ=255)                                                                                    cctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCttt                                                            <  1:131244/147‑1 (MQ=255)                                                                                     ctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTc                                                         <  5:59967/149‑1 (MQ=255)                                                                                            cTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGt                                                  >  3:65583/1‑149 (MQ=255)                                                                                            cTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGt                                                  <  3:254361/149‑1 (MQ=255)                                                                                               tGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAgccaggcaggtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgatg                                                 >  7:251054‑M2/1‑47 (MQ=255)                                                                                                               aGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTg                                <  3:102127/149‑1 (MQ=255)                                                                                                                   gACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                                                                                    <  2:83247/93‑1 (MQ=255)                                                                                                                   gACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                                                                                    >  1:83247/1‑93 (MQ=255)                                                                                                                      tGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCTTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGa                         >  7:30410/1‑149 (MQ=255)                                                                                                                               cacaCCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGc                >  4:167441/1‑149 (MQ=255)                                                                                                                               cacaCCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCAGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGc                >  3:312790/1‑149 (MQ=255)                                                                                                                               cacaCCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTCACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGc                >  3:297138/1‑149 (MQ=255)                                                                                                                                acacCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACACCCTGCATGGCGCCTTTGCATTCGGACGGGTTGGCCTTGACCAGTTGATAGGGGATGTCTCCTTTGTCCGACGGTGCCACTGACAGCTGGGTGCAGGTGACCTTCGAGc                >  8:146664/1‑148 (MQ=255)                                                                                                                                     g‑ccgcGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGCCATCCt          >  2:2133/1‑149 (MQ=255)                                                                                                                                             gTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGACATCCTTGGCCTg   >  4:198907/1‑149 (MQ=255)                                                                                                                                              tAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTTACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGCCATCCTTGGCCTGc  <  4:297138/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    GATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTGACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTCCGCCGGTGCCACTGCCAGCTGGGTGCCGGTGACCTTCGAGCCATCCTTGGCCTGC  >  NC_002947/3400638‑3400925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.