New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3400726	33 (0.660)	3 (0.060)	3/244	NT	8.4%	coding (475/528 nt)	PP_3007	hypothetical protein
	?	NC_002947	= 3400778	34 (0.710)					coding (423/528 nt)	PP_3007	hypothetical protein

CTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTC  >  NC_002947/3400583‑3400870                                                                                                                                                |                                                                                                                                                    cTTGTGTAAGGCAAGTACCCCGGCCATCCAGCGGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCtt                                                                                                                                                >  2:90489/1‑149 (MQ=255)         aGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGAGCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTGTGTTCTg‑c                                                                                                                                       >  5:93192/1‑149 (MQ=255)         aGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTACCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTg‑c                                                                                                                                       <  4:107729/149‑1 (MQ=255)           gCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTg‑cgc                                                                                                                                     >  5:222021/1‑149 (MQ=255)           gCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTg‑cgc                                                                                                                                     <  5:269086/149‑1 (MQ=255)            cAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGcc                                                                                                                                    >  2:131244/1‑149 (MQ=255)                  ccccGGCCATCCAGCGGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCa                                                                                                                               <  1:90489/148‑1 (MQ=255)                   cccGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGt                                                                                                                             >  2:167969/1‑149 (MQ=255)                                ccGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGT‑CAGTCGACTGCACGgcgc                                                                                                               <  6:222021/149‑1 (MQ=255)                                       gCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACAccg                                                                                                        >  8:258381/1‑149 (MQ=255)                                             cATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCtacccgcggcggtgtggcgccgtcagtcgactgcacggcgcagaaca                                                                                                      >  7:251054‑M1/1‑100 (MQ=255)                                                        gATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCtacccgcggcggtgtggcgccgtcagtcgactgcacggcgcagaacaaaggtgccaggca                                                                                         <  8:251054‑M1/149‑61 (MQ=255)                                                        gATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCtacccgcggcggtgtggcgccgtcagtcgactgcacggcgcagaacaaaggtgccaggc                                                                                          <  1:56634‑M1/148‑60 (MQ=255)                                                        gATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGgcg                                                                                      >  7:109412/1‑149 (MQ=255)                                                           catcaCTTGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTg                                                                                   >  6:167642/1‑149 (MQ=255)                                                              caCTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGat                                                                                >  3:6716/1‑149 (MQ=255)                                                                   gCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCGCCCGCGGGTAGCCAGGCGCTGGAtata                                                                             <  1:167969/148‑1 (MQ=255)                                                                          gTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGAcccc                                                                    >  2:278048/1‑149 (MQ=255)                                                                              ggTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGc                                                                <  2:51985/149‑1 (MQ=255)                                                                                  gggTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATgg                                                            <  7:258381/149‑1 (MQ=255)                                                                                     tGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGgcgc                                                         <  1:278048/149‑1 (MQ=255)                                                                                                      tCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGc                                                                <  5:6138/125‑1 (MQ=255)                                                                                                      tCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGc                                                                >  6:6138/1‑125 (MQ=255)                                                                                                              acaTAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGTCGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTg                                     >  1:233286/1‑145 (MQ=255)                                                                                                              acaTAGGCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTg                                     <  2:233286/144‑1 (MQ=255)                                                                                                               caTAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCtt                                >  8:197750/1‑148 (MQ=255)                                                                                                               caTAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCtt                                <  7:197750/148‑1 (MQ=255)                                                                                                                 tAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                             <  8:109412/149‑1 (MQ=255)                                                                                                                    tCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAg                          >  8:112375/1‑149 (MQ=255)                                                                                                                        ccTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                             <  5:51181/142‑1 (MQ=255)                                                                                                                        ccTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGa                      <  4:6716/149‑1 (MQ=255)                                                                                                                        ccTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACCGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGAc                             >  6:51181/1‑142 (MQ=255)                                                                                                                            gTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAgg                  <  5:167642/149‑1 (MQ=255)                                                                                                                              aCTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAggg                 >  6:59967/1‑148 (MQ=255)                                                                                                                               cTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAgggg                <  7:112375/148‑1 (MQ=255)                                                                                                                                       cctgcctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCt       >  4:254361/1‑149 (MQ=255)                                                                                                                                         tgcctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAgccaggcaggtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatc     <  8:251054‑M2/149‑90 (MQ=255)                                                                                                                                          gcctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAgccaggcaggtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatc     <  1:56634‑M2/148‑90 (MQ=255)                                                                                                                                           cctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCttt     <  1:131244/147‑1 (MQ=255)                                                                                                                                            ctgGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTc  <  5:59967/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    CTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTG‑CGCCGTGCAGTCGACTG‑ACGGCGCCACACCG‑CCGCGGGTAGCCAGGCGCTGGATATAGCTGACCCCCTGCATGGCGCCTTTGCCTTCGGCCGGGTTGGCCTTGACCAGTTGATAGGGGATGGCGCCTTTGTC  >  NC_002947/3400583‑3400870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.