New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522770	35 (0.690)	3 (0.060)	3/252	NT	6.9%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522819	47 (0.960)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase

CCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3522660‑3522770 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGG  <  NC_002947/3522819‑3522709                                                                                                                                                                                                                                CCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGG                                                                           >  6:83183/1‑149                GGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGC                                                             <  5:83183/148‑1                 GCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGTTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCAT                                                           <  5:229018/149‑1                                                                                                             GCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGG  >  7:103733/1‑114                                                                                                             GCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGG  <  8:103733/114‑1                                                                                                                                                                                                                                CCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3522660‑3522770 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGG  <  NC_002947/3522819‑3522709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.